Examples of org.openbel.framework.common.InvalidArgument

org.openbel.framework.common.InvalidArgument
BEL runtime exception indicating an invalid argument was provided.
This class should be used in favor of {@link IllegalArgumentException} as itforces a standard for runtime exception reporting.

     * {@inheritDoc}
     */
    @Override
    public List<KamNode> getKamNodes(final Kam kam, final KamNode example) {
        if (kam == null) {
            throw new InvalidArgument("kam", kam);
        }


        if (example == null) {
            throw new InvalidArgument("example", example);
        }
        if (!exists(kam)) return null;
        List<KamNode> kamNodeList = new ArrayList<KamNode>();
        try {
            final KAMStoreDao ksdao = kamStoreDao(kam.getKamInfo());

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     * {@inheritDoc}
     */
    @Override
    public KamNode getKamNodeForTerm(Kam k, String t, FunctionEnum fx,
            SkinnyUUID[] uuids) {
        if (k == null) throw new InvalidArgument("k is null");
        if (t == null) throw new InvalidArgument("t is null");
        if (fx == null) throw new InvalidArgument("fx is null");
        if (uuids == null || uuids.length == 0)
            throw new InvalidArgument("uuids", uuids);


        try {
            final KAMStoreDao dao = kamStoreDao(k.getKamInfo());
            Integer nid = dao.getKamNodeForTerm(t, fx, uuids);
            return nid == null ? null : k.findNode(nid);

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     */
    @Override
    public List<Citation> getCitations(KamInfo kamInfo,
            BelDocumentInfo belDocumentInfo) {
        if (null == kamInfo) {
            throw new InvalidArgument("kamInfo", kamInfo);
        }
        if (!exists(kamInfo)) return null;


        try {
            return kamStoreDao(kamInfo).getCitations(belDocumentInfo);

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    @Override
    public List<Citation> getCitations(KamInfo kamInfo,
            BelDocumentInfo docInfo, CitationType type)
            throws InvalidArgument, KAMStoreException {
        if (null == kamInfo) {
            throw new InvalidArgument("kamInfo", kamInfo);
        }
        if (!exists(kamInfo)) return null;
        try {
            return kamStoreDao(kamInfo).getCitations(docInfo, type);
        } catch (SQLException e) {

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     */
    @Override
    public List<Citation> getCitations(KamInfo kamInfo,
            CitationType citationType) {
        if (null == kamInfo) {
            throw new InvalidArgument("kamInfo", kamInfo);
        }
        if (!exists(kamInfo)) return null;
        try {
            return kamStoreDao(kamInfo).getCitations(citationType);
        } catch (SQLException e) {

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     */
    @Override
    public List<Citation> getCitations(KamInfo kamInfo,
            CitationType type, String... referenceIds) {
        if (null == kamInfo) {
            throw new InvalidArgument("kamInfo", kamInfo);
        }
        if (!exists(kamInfo)) return null;
        try {
            return kamStoreDao(kamInfo).getCitations(type, referenceIds);
        } catch (SQLException e) {

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    public KAMStoreDaoImpl(String schemaName, DBConnection dbc)
            throws SQLException {
        super(dbc, schemaName);


        if (dbc == null) {
            throw new InvalidArgument("dbc is null");
        }


        if (dbc.getConnection().isClosed()) {
            throw new InvalidArgument("dbc is closed and cannot be used");
        }
        this.cacheableAnnotationDefinitionService =
                new CacheableAnnotationDefinitionServiceImpl();
    }

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            return getKamNodeCandidates(namespace, parameterValue);
        }


        // guard against blank parameter value
        if (noLength(parameterValue)) {
            throw new InvalidArgument("parameterValue is blank");
        }


        final Integer objectId = getParameterObjectValueId(parameterValue);
        if (objectId == null) {
            // we couldn't find a string for parameterValue, so return no matches

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    @Override
    public List<Integer> getKamNodeCandidates(Namespace namespace,
            String parameterValue) throws SQLException {
        // guard against blank parameter value
        if (noLength(parameterValue)) {
            throw new InvalidArgument("parameterValue is blank");
        }


        final Integer objectId = getParameterObjectValueId(parameterValue);
        if (objectId == null) {
            // we couldn't find a string for parameterValue, so return no matches

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     */
    @Override
    public List<Integer> getKamNodeCandidates(SkinnyUUID uuid)
            throws SQLException {
        if (uuid == null) {
            throw new InvalidArgument("uuid", uuid);
        }
        PreparedStatement ps =
                getPreparedStatement(SELECT_KAM_NODE_IDS_FOR_UUID_SQL);
        ps.setLong(1, uuid.getMostSignificantBits());
        ps.setLong(2, uuid.getLeastSignificantBits());

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org.openbel.framework.api.BasicPathFinder

org.openbel.framework.api.DefaultKamCacheService

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org.openbel.framework.api.internal.KAMCatalogDao

org.openbel.framework.api.internal.KAMStoreDaoImpl

org.openbel.framework.api.internal.KAMUpdateDaoImpl

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