Examples of org.openbel.framework.api.BasicPathFinder

org.openbel.framework.api.BasicPathFinder
Implements a basic {@link PathFinder} implementation with a max depthconstraint.
The max search depth constraint default is defined at {@link BasicPathFinder#DEFAULT_MAX_SEARCH_DEPTH}. To override this constraints create with {@link BasicPathFinder#BasicPathFinder(int)}.
@author Anthony Bargnesi {@code }

    @Override
    public List<SimplePath> findPaths(final Kam kam,
            final List<KamNode> sources,
            final List<KamNode> targets, final int maxSearchDepth)
            throws PathFindServiceException {
        final PathFinder pathFinder = new BasicPathFinder(kam);


        final Kam.KamNode[] sourceKamNodes =
                convert(kam, sources);


        final Kam.KamNode[] targetKamNodes =
                convert(kam, targets);


        final org.openbel.framework.api.SimplePath[] paths = pathFinder
                .findPaths(sourceKamNodes, targetKamNodes);


        final List<SimplePath> wsSimplePaths = new ArrayList<SimplePath>(
                paths.length);

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    @Override
    public List<SimplePath> scan(final Kam kam,
            List<KamNode> sources,
            final int maxSearchDepth)
            throws PathFindServiceException {
        final PathFinder pathFinder = new BasicPathFinder(kam);


        final Kam.KamNode[] sourceKamNodes =
                convert(kam, sources);


        final org.openbel.framework.api.SimplePath[] paths = pathFinder
                .scan(sourceKamNodes);


        final List<SimplePath> wsSimplePaths = new ArrayList<SimplePath>(
                paths.length);

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    @Override
    public List<SimplePath> interconnect(final Kam kam,
            List<KamNode> sources,
            final int maxSearchDepth)
            throws PathFindServiceException {
        final PathFinder pathFinder = new BasicPathFinder(kam, maxSearchDepth);


        final Kam.KamNode[] sourceKamNodes =
                convert(kam, sources);


        final org.openbel.framework.api.SimplePath[] paths = pathFinder
                .interconnect(sourceKamNodes);


        final List<SimplePath> wsSimplePaths = new ArrayList<SimplePath>(
                paths.length);

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Related Classes of org.openbel.framework.api.BasicPathFinder

org.openbel.framework.api.Kam.KamNode

org.openbel.framework.common.InvalidArgument

org.openbel.framework.ws.service.PathFindServiceImpl

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