Package org.openbel.framework.common

Examples of org.openbel.framework.common.InvalidArgument

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    /**
     * {@inheritDoc}
     */
    @Override
    public List<BelTerm> getSupportingTerms(KamNode kamNode) {
        if (kamNode == null) throw new InvalidArgument("kamNode", kamNode);
        if (!exists(kamNode.getKam())) return null;
        return getSupportingTerms(kamNode, false, null);
    }
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    /**
     * {@inheritDoc}
     */
    @Override
    public List<BelTerm> getSupportingTerms(KamNode kamNode, boolean rmvdups) {
        if (kamNode == null) throw new InvalidArgument("kamNode", kamNode);
        if (!exists(kamNode.getKam())) return null;
        return getSupportingTerms(kamNode, rmvdups, null);
    }
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     * {@inheritDoc}
     */
    @Override
    public List<BelTerm> getSupportingTerms(KamNode kamNode,
            boolean removeDuplicates, NamespaceFilter fltr) {
        if (kamNode == null) throw new InvalidArgument("kamNode", kamNode);
        KamInfo ki = kamNode.getKam().getKamInfo();
        if (!exists(ki)) return null;
        List<BelTerm> terms;
        try {
            terms = kamStoreDao(ki).getSupportingTerms(kamNode, fltr);
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     * {@inheritDoc}
     */
    @Override
    public List<TermParameter> getTermParameters(final KamInfo ki,
            final BelTerm belTerm) {
        if (ki == null) throw new InvalidArgument("missing KAM info");
        if (belTerm == null) throw new InvalidArgument("missing BEL term");
        if (!exists(ki)) return null;
        try {
            return kamStoreDao(ki).getTermParameters(belTerm);
        } catch (SQLException e) {
            final String fmt = "error getting term parameters for %s";
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     * {@inheritDoc}
     */
    @Override
    public KamNode getKamNode(final Kam kam, String belTermString) {
        if (noLength(belTermString))
            throw new InvalidArgument("belTermString", belTermString);
        KamInfo ki = kam.getKamInfo();
        if (!exists(ki)) return null;
        KamNode kamNode;
        Integer nodeID;
        try {
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    /**
     * {@inheritDoc}
     */
    @Override
    public KamNode getKamNode(final Kam kam, BelTerm belTerm) {
        if (kam == null) throw new InvalidArgument("missing KAM");
        if (belTerm == null) throw new InvalidArgument("missing BEL term");
        if (!exists(kam)) return null;
        return getKamNode(kam, belTerm.getLabel());
    }
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     */
    @Override
    public List<KamNode> getKamNodes(final Kam kam, FunctionEnum functionType,
            Namespace namespace, String parameterValue) {
        if (parameterValue == null) {
            throw new InvalidArgument("parameterValue", parameterValue);
        }
        if (!exists(kam)) return null;
        List<Integer> ids;
        try {
            ids = kamStoreDao(kam.getKamInfo()).getKamNodeCandidates(
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     */
    @Override
    public List<KamNode> getKamNodes(final Kam kam, Namespace namespace,
            String parameterValue) {
        if (parameterValue == null) {
            throw new InvalidArgument("parameterValue", parameterValue);
        }
        if (!exists(kam)) return null;
        List<Integer> ids;
        try {
            ids = kamStoreDao(kam.getKamInfo()).getKamNodeCandidates(
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    /**
     * {@inheritDoc}
     */
    @Override
    public List<KamNode> getKamNodes(final Kam k, final SkinnyUUID uuid) {
        if (uuid == null) throw new InvalidArgument("uuid", uuid);
        if (!exists(k)) return null;
        List<Integer> ids;
        try {
            ids = kamStoreDao(k.getKamInfo()).getKamNodeCandidates(uuid);
            List<KamNode> kamNodeList = new ArrayList<KamNode>();
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     */
    @Override
    public List<KamNode> getKamNodes(final Kam k, final FunctionEnum function,
            final SkinnyUUID uuid) {
        if (uuid == null) {
            throw new InvalidArgument("uuid", uuid);
        }
        if (!exists(k)) return null;
        List<Integer> ids;
        try {
            ids = kamStoreDao(k.getKamInfo()).getKamNodeCandidates(
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Related Classes of org.openbel.framework.common.InvalidArgument

  • org.openbel.framework.api.AbstractPathFinder
  • org.openbel.framework.api.BasicPathFinder
  • org.openbel.framework.api.DefaultKamCacheService
  • org.openbel.framework.api.Equivalencer
  • org.openbel.framework.api.internal.KAMCatalogDao
  • org.openbel.framework.api.internal.KAMStoreDaoImpl
  • org.openbel.framework.api.internal.KAMUpdateDaoImpl
  • org.openbel.framework.api.KamCacheService$LoadKAMResult
  • org.openbel.framework.api.KamImpl
  • org.openbel.framework.api.KAMStoreImpl
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