Package org.apache.airavata.commons.gfac.type

Examples of org.apache.airavata.commons.gfac.type.ApplicationDescription

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        ((GlobusHostType) host.getType()).addGlobusGateKeeperEndPoint("trestles-login2.sdsc.edu:2119/jobmanager-pbstest2");

        /*
        * App
        */
        ApplicationDescription appDesc =
                new ApplicationDescription(HpcApplicationDeploymentType.type);
        ApplicationDeploymentDescriptionType applicationDeploymentDescriptionType
                = appDesc.getType();
        applicationDeploymentDescriptionType.addNewApplicationName().setStringValue(serviceName);
        String tempDir = "/oasis/projects/nsf/uic151/gridchem/airavata-workdirs";
        String date = (new Date()).toString();
        date = date.replaceAll(" ", "_");
        date = date.replaceAll(":", "_");
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            List<ServiceDescription> serviceDescriptors = applicationManager.getAllServiceDescriptions();
          for (ServiceDescription serviceDescription : serviceDescriptors) {
            String serviceName = serviceDescription.getType().getName();
        Map<String,ApplicationDescription> deploymentDescriptions = applicationManager.getApplicationDescriptors(serviceName);
        for (String hostName : deploymentDescriptions.keySet()) {
          ApplicationDescription descriptionWrap=deploymentDescriptions.get(hostName);
          list.add(new ApplicationDeploymentDescriptionWrap(getAiravataAPI(), descriptionWrap, serviceName,hostName));
        }
      }
     
    }else{
      Map<String,ApplicationDescription> deploymentDescriptions = getAiravataAPI().getApplicationManager().getApplicationDescriptors(serviceName);
      for (String hostName : deploymentDescriptions.keySet()) {
        ApplicationDescription descriptionWrap=deploymentDescriptions.get(hostName);
        list.add(new ApplicationDeploymentDescriptionWrap(getAiravataAPI(), descriptionWrap, getServiceName(),hostName));
      }
    }
    return list;
    }
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    private static final Logger log = LoggerFactory.getLogger(LocalDirectorySetupHandler.class);

    public void invoke(JobExecutionContext jobExecutionContext) throws GFacHandlerException {
        log.info("Invoking GramDirectorySetupHandler ...");
        HostDescriptionType type = jobExecutionContext.getApplicationContext().getHostDescription().getType();
        ApplicationDescription applicationDeploymentDescription = jobExecutionContext.getApplicationContext().getApplicationDeploymentDescription();
        ApplicationDeploymentDescriptionType app = applicationDeploymentDescription.getType();
        log.debug("working diectroy = " + app.getStaticWorkingDirectory());
        log.debug("temp directory = " + app.getScratchWorkingDirectory());

        makeFileSystemDir(app.getStaticWorkingDirectory(),jobExecutionContext);
        makeFileSystemDir(app.getScratchWorkingDirectory(),jobExecutionContext);
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        host.getType().setHostAddress("gw85.iu.xsede.org");
        applicationContext.setHostDescription(host);
        /*
           * App
           */
        ApplicationDescription appDesc = new ApplicationDescription();
        ApplicationDeploymentDescriptionType app = appDesc.getType();
        ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
        name.setStringValue("EchoSSH");
        app.setApplicationName(name);

        /*
 
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        ((GlobusHostType)host.getType()).setGlobusGateKeeperEndPointArray(new String[]{gramAddress});
        ((GlobusHostType)host.getType()).setGridFTPEndPointArray(new String[]{gridftpAddress});
        /*
           * App
           */
        ApplicationDescription appDesc = new ApplicationDescription(HpcApplicationDeploymentType.type);
        HpcApplicationDeploymentType app = (HpcApplicationDeploymentType)appDesc.getType();
        ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
        name.setStringValue("EchoLocal");
        app.setApplicationName(name);
        ProjectAccountType projectAccountType = app.addNewProjectAccount();
        projectAccountType.setProjectAccountNumber("TG-AST110064");
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    }

    public static ApplicationDescription registerApplication(String appName, String exeuctableLocation, String scratchWorkingDirectory, String hostName,
                                                                       String projAccNumber, String queueName, String cpuCount, String nodeCount, String maxMemory) throws Exception {
        // Create Application Description
        ApplicationDescription appDesc = new ApplicationDescription(HpcApplicationDeploymentType.type);
        HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) appDesc.getType();
        app.setCpuCount(Integer.parseInt(cpuCount));
        app.setNodeCount(Integer.parseInt(nodeCount));
        ApplicationDeploymentDescriptionType.ApplicationName name = appDesc.getType().addNewApplicationName();
        name.setStringValue(appName);
        app.setExecutableLocation(exeuctableLocation);
        app.setScratchWorkingDirectory(scratchWorkingDirectory);
        ProjectAccountType projectAccountType = ((HpcApplicationDeploymentType) appDesc.getType()).addNewProjectAccount();
        projectAccountType.setProjectAccountNumber(projAccNumber);
        QueueType queueType = app.addNewQueue();
        queueType.setQueueName(queueName);
        app.setMaxMemory(Integer.parseInt(maxMemory));
        return appDesc;
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        serviceDescriptor.setOutputParams(outputParams);
        return serviceDescriptor;
    }

    public static ApplicationDescription createApplicationDescription(ApplicationDescriptor applicationDescriptor){
        ApplicationDescription applicationDescription = new ApplicationDescription();
        ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
        name.setStringValue(applicationDescriptor.getName());
        applicationDescription.getType().setApplicationName(name);
        applicationDescription.getType().setExecutableLocation(applicationDescriptor.getExecutablePath());
        applicationDescription.getType().setScratchWorkingDirectory(applicationDescriptor.getWorkingDir());

        if (applicationDescriptor.getInputDir() != null){
            applicationDescription.getType().setInputDataDirectory(applicationDescriptor.getInputDir());
        }
        if (applicationDescriptor.getOutputDir() != null){
            applicationDescription.getType().setOutputDataDirectory(applicationDescriptor.getOutputDir());
        }
        if (applicationDescriptor.getStdIn() != null){
            applicationDescription.getType().setStandardInput(applicationDescriptor.getStdIn());
        }
        if (applicationDescriptor.getStdOut() != null){
            applicationDescription.getType().setStandardOutput(applicationDescriptor.getStdOut());
        }
        if (applicationDescriptor.getStdError() != null){
            applicationDescription.getType().setStandardError(applicationDescriptor.getStdError());
        }
        if (applicationDescriptor.getStaticWorkigDir() != null){
            applicationDescription.getType().setStaticWorkingDirectory(applicationDescriptor.getStaticWorkigDir());
        }
        HashMap<String,String> environmentVariables = applicationDescriptor.getEnvironmentVariables();
        if (environmentVariables != null && !environmentVariables.isEmpty()){
            NameValuePairType[] appEnviVariablesArray = new NameValuePairType[environmentVariables.size()];
            for(String key : environmentVariables.keySet()) {
                int i = 0;
                NameValuePairType nameValuePairType = applicationDescription.getType().addNewApplicationEnvironment();
                nameValuePairType.setName(key);
                nameValuePairType.setValue(environmentVariables.get(key));
                appEnviVariablesArray[i] = nameValuePairType;
                i++;
            }
            applicationDescription.getType().setApplicationEnvironmentArray(appEnviVariablesArray);
        }

        //set advanced options according app desc type
        if(applicationDescriptor.getApplicationDescType() != null && !applicationDescriptor.getApplicationDescType().isEmpty()){
            if (applicationDescriptor.getApplicationDescType().equals(ApplicationDescriptorTypes.HPC_APP_DEP_DESC_TYPE)){
                ApplicationDescription appDesc = new ApplicationDescription(HpcApplicationDeploymentType.type);
                appDesc.getType().setApplicationName(name);
                appDesc.getType().setExecutableLocation(applicationDescriptor.getExecutablePath());
                appDesc.getType().setScratchWorkingDirectory(applicationDescriptor.getWorkingDir());

                if (applicationDescriptor.getInputDir() != null){
                    appDesc.getType().setInputDataDirectory(applicationDescriptor.getInputDir());
                }
                if (applicationDescriptor.getOutputDir() != null){
                    appDesc.getType().setOutputDataDirectory(applicationDescriptor.getOutputDir());
                }
                if (applicationDescriptor.getStdIn() != null){
                    appDesc.getType().setStandardInput(applicationDescriptor.getStdIn());
                }
                if (applicationDescriptor.getStdOut() != null){
                    appDesc.getType().setStandardOutput(applicationDescriptor.getStdOut());
                }
                if (applicationDescriptor.getStdError() != null){
                    appDesc.getType().setStandardError(applicationDescriptor.getStdError());
                }
                if (applicationDescriptor.getStaticWorkigDir() != null){
                    appDesc.getType().setStaticWorkingDirectory(applicationDescriptor.getStaticWorkigDir());
                }
                HashMap<String,String> envVariables = applicationDescriptor.getEnvironmentVariables();
                if (envVariables != null && !envVariables.isEmpty()){
                    NameValuePairType[] appEnviVariablesArray = new NameValuePairType[envVariables.size()];
                    for(String key : envVariables.keySet()) {
                        int i = 0;
                        NameValuePairType nameValuePairType = applicationDescription.getType().addNewApplicationEnvironment();
                        nameValuePairType.setName(key);
                        nameValuePairType.setValue(envVariables.get(key));
                        appEnviVariablesArray[i] = nameValuePairType;
                        i++;
                    }
                    appDesc.getType().setApplicationEnvironmentArray(appEnviVariablesArray);
                }

                HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) appDesc.getType();

                ProjectAccountType projectAccountType = app.addNewProjectAccount();
                if (applicationDescriptor.getProjectNumber() != null){
                    projectAccountType.setProjectAccountNumber(applicationDescriptor.getProjectNumber());
                }
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        airavataAPI.getApplicationManager().addServiceDescription(serviceDescription);
        Assert.assertTrue(airavataAPI.getApplicationManager().isServiceDescriptorExists(
                serviceDescription.getType().getName()));

        // Deployment descriptor
        ApplicationDescription applicationDeploymentDescription = descriptorBuilder
                .buildApplicationDeploymentDescription("EchoApplication", "/bin/echo", "/tmp");

        log("Adding deployment description ...");
        airavataAPI.getApplicationManager().addApplicationDescription(serviceDescription, hostDescription,
                applicationDeploymentDescription);

        Assert.assertTrue(airavataAPI.getApplicationManager().isApplicationDescriptorExists(
                serviceDescription.getType().getName(), hostDescription.getType().getHostName(),
                applicationDeploymentDescription.getType().getApplicationName().getStringValue()));

        log("Saving workflow ...");
        Workflow workflow = new Workflow(getWorkflowComposeContent("src/test/resources/EchoWorkflow.xwf"));
        airavataAPI.getWorkflowManager().addWorkflow(workflow);
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public class AppDescriptorCheckHandler implements GFacHandler {
    private static final Logger logger = LoggerFactory.getLogger(AppDescriptorCheckHandler.class);

    public void invoke(JobExecutionContext jobExecutionContext) throws GFacHandlerException {
        logger.info("Invoking ApplicationDescriptorCheckHandler ...");
        ApplicationDescription app = jobExecutionContext.getApplicationContext().getApplicationDeploymentDescription();
        ApplicationDeploymentDescriptionType appDesc = app.getType();
        if (appDesc.getScratchWorkingDirectory() == null) {
            appDesc.setScratchWorkingDirectory("/tmp");
        }

        /*
 
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    applicationContext.setServiceDescription(getServiceDesc());
    return applicationContext;
  }

  protected ApplicationDescription getApplicationDesc(JobTypeType jobType) {
    ApplicationDescription appDesc = new ApplicationDescription(
        HpcApplicationDeploymentType.type);
    HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) appDesc
        .getType();
    ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory
        .newInstance();
    name.setStringValue("EchoLocal");
    app.setApplicationName(name);
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