if (args.length > 0) {
Genome genome1 = new Genome(args[0]);
new ORFFile().readFile(args[0] + ".txt", genome1);
genome1.sortOrfList();
FastaFile fastaFile1 = new FastaFile();
fastaFile1.readFile(args[0] + ".fasta", genome1);
genome1.attachSequences(fastaFile1.getSequences());
Genome genome2 = new Genome(args[1]);
new ORFFile().readFile(args[1] + ".txt", genome2);
genome2.sortOrfList();
FastaFile fastaFile2 = new FastaFile();