List of foundDistance2() Examples

Examples of foundDistance2()

org.jmol.api.AtomIndexIterator.foundDistance2()
org.jmol.bspt.CubeIterator.foundDistance2()
After calling nextElement(), allows one to find out the value of the distance squared. To get the distance just take the sqrt. @return float

Examples of org.jmol.api.AtomIndexIterator.foundDistance2()

        if (!isNearInSetA && !isNearInSetB
            || !(isAtomInSetA && isNearInSetB || isAtomInSetB && isNearInSetA)
            || isFirstExcluded && bsExclude.get(atomIndexNear))
          continue;
        short order = getBondOrder(myBondingRadius, atomNear
            .getBondingRadiusFloat(), iter.foundDistance2(), minBondDistance2,
            bondTolerance);
        if (order > 0) {
          if (checkValencesAndBond(atom, atomNear, order, mad, bsBonds))
            nNew++;
        }

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Examples of org.jmol.api.AtomIndexIterator.foundDistance2()

      while (iter.hasNext()) {
        Atom atomNear = atoms[iter.next()];
        int elementNumberNear = atomNear.getElementNumber();
        if (atomNear == atom || !isH && elementNumberNear != 7
            && elementNumberNear != 8 || isH && elementNumberNear == 1
            || (d2 = iter.foundDistance2()) < min2 || d2 > max2 || firstIsCO
            && bsCO.get(atomNear.index) || atom.isBonded(atomNear)) {
          continue;
        }
        if (minAttachedAngle > 0) {
          v1.sub(atom, atomNear);

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Examples of org.jmol.bspt.CubeIterator.foundDistance2()

        )
          continue;
        if (!(isAtomInSetA && isNearInSetB || isAtomInSetB && isNearInSetA))
          continue;
        short order = getBondOrder(myBondingRadius, atomNear
            .getBondingRadiusFloat(), iter.foundDistance2(), minBondDistance2,
            bondTolerance);
        if (order > 0) {
          if (checkValencesAndBond(atom, atomNear, order, mad, bsBonds))
            nNew++;
        }

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