Examples of XBELTerm


Examples of org.openbel.bel.xbel.model.XBELTerm

     */
    @Override
    public Statement convert(XBELStatement source) {
        if (source == null) return null;

        XBELTerm subject = source.getSubject().getTerm();
        TermConverter tConverter = new TermConverter();
        // Defer to TermConverter for statement construction
        Statement dest = new Statement(tConverter.convert(subject));

        XBELAnnotationGroup annotationGroup = source.getAnnotationGroup();
        AnnotationGroupConverter agConverter = new AnnotationGroupConverter();
        // Defer to AnnotationGroupConverter
        dest.setAnnotationGroup(agConverter.convert(annotationGroup));

        String comment = source.getComment();
        dest.setComment(comment);

        // Set statement relationship, if present on source
        Relationship r = source.getRelationship();
        if (r != null)
            dest.setRelationshipType(fromString(r.value()));

        XBELObject object = source.getObject();
        if (object != null) {
            if (object.isSetStatement()) {
                XBELStatement statement = object.getStatement();
                StatementConverter sConverter = new StatementConverter();
                // Defer to StatementConverter
                dest.setObject(new Object(sConverter.convert(statement)));
            } else if (object.isSetTerm()) {
                XBELTerm term = object.getTerm();
                // Defer to TermConverter
                dest.setObject(new Object(tConverter.convert(term)));
            }
        }

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Examples of org.openbel.bel.xbel.model.XBELTerm

     */
    @Override
    public XBELTerm convert(Term source) {
        if (source == null) return null;

        XBELTerm xt = new XBELTerm();

        FunctionEnum functionEnum = source.getFunctionEnum();
        Function func = Function.fromValue(functionEnum.getDisplayValue());
        xt.setFunction(func);

        List<BELObject> functionArgs = source.getFunctionArguments();
        List<JAXBElement> prmtrms = xt.getParameterOrTerm();

        final ParameterConverter pConverter = new ParameterConverter();
        for (final BELObject bo : functionArgs) {
            if (bo instanceof Parameter) {
                // Defer to ParameterConverter
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