/**
* Copyright (C) 2012-2013 Selventa, Inc.
*
* This file is part of the OpenBEL Framework.
*
* This program is free software; you can redistribute it and/or modify it
* under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* The OpenBEL Framework is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
* or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public
* License for more details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with the OpenBEL Framework. If not, see <http://www.gnu.org/licenses/>.
*
* Additional Terms under LGPL v3:
*
* This license does not authorize you and you are prohibited from using the
* name, trademarks, service marks, logos or similar indicia of Selventa, Inc.,
* or, in the discretion of other licensors or authors of the program, the
* name, trademarks, service marks, logos or similar indicia of such authors or
* licensors, in any marketing or advertising materials relating to your
* distribution of the program or any covered product. This restriction does
* not waive or limit your obligation to keep intact all copyright notices set
* forth in the program as delivered to you.
*
* If you distribute the program in whole or in part, or any modified version
* of the program, and you assume contractual liability to the recipient with
* respect to the program or modified version, then you will indemnify the
* authors and licensors of the program for any liabilities that these
* contractual assumptions directly impose on those licensors and authors.
*/
package org.openbel.framework.common.xbel.converters;
import static org.openbel.framework.common.enums.RelationshipType.fromString;
import org.openbel.bel.xbel.model.Relationship;
import org.openbel.bel.xbel.model.XBELAnnotationGroup;
import org.openbel.bel.xbel.model.XBELObject;
import org.openbel.bel.xbel.model.XBELStatement;
import org.openbel.bel.xbel.model.XBELSubject;
import org.openbel.bel.xbel.model.XBELTerm;
import org.openbel.framework.common.model.AnnotationGroup;
import org.openbel.framework.common.model.Statement;
import org.openbel.framework.common.model.Term;
import org.openbel.framework.common.model.Statement.Object;
/**
* Converter class for converting between {@link XBELStatement} and
* {@link Statement}.
*
*/
public final class StatementConverter extends
JAXBConverter<XBELStatement, Statement> {
/**
* {@inheritDoc}
*/
@Override
public Statement convert(XBELStatement source) {
if (source == null) return null;
XBELTerm subject = source.getSubject().getTerm();
TermConverter tConverter = new TermConverter();
// Defer to TermConverter for statement construction
Statement dest = new Statement(tConverter.convert(subject));
XBELAnnotationGroup annotationGroup = source.getAnnotationGroup();
AnnotationGroupConverter agConverter = new AnnotationGroupConverter();
// Defer to AnnotationGroupConverter
dest.setAnnotationGroup(agConverter.convert(annotationGroup));
String comment = source.getComment();
dest.setComment(comment);
// Set statement relationship, if present on source
Relationship r = source.getRelationship();
if (r != null)
dest.setRelationshipType(fromString(r.value()));
XBELObject object = source.getObject();
if (object != null) {
if (object.isSetStatement()) {
XBELStatement statement = object.getStatement();
StatementConverter sConverter = new StatementConverter();
// Defer to StatementConverter
dest.setObject(new Object(sConverter.convert(statement)));
} else if (object.isSetTerm()) {
XBELTerm term = object.getTerm();
// Defer to TermConverter
dest.setObject(new Object(tConverter.convert(term)));
}
}
return dest;
}
/**
* {@inheritDoc}
*/
@Override
public XBELStatement convert(Statement source) {
if (source == null) return null;
XBELStatement xstmt = new XBELStatement();
Term subject = source.getSubject();
TermConverter tConverter = new TermConverter();
XBELSubject xs = new XBELSubject();
// Defer to TermConverter
xs.setTerm(tConverter.convert(subject));
xstmt.setSubject(xs);
AnnotationGroup ag = source.getAnnotationGroup();
AnnotationGroupConverter agConverter = new AnnotationGroupConverter();
// Defer to AnnotationGroupConverter
xstmt.setAnnotationGroup(agConverter.convert(ag));
String comment = source.getComment();
xstmt.setComment(comment);
// Set statement relationship, if present on source
org.openbel.framework.common.enums.RelationshipType r =
source.getRelationshipType();
if (r != null)
xstmt.setRelationship(Relationship.fromValue(r.getDisplayValue()));
Object object = source.getObject();
if (object != null) {
if (object.getStatement() != null) {
XBELObject xo = new XBELObject();
StatementConverter sConverter = new StatementConverter();
// Defer to StatementConverter
xo.setStatement(sConverter.convert(object.getStatement()));
xstmt.setObject(xo);
} else if (object.getTerm() != null) {
XBELObject xo = new XBELObject();
// Defer to TermConverter
xo.setTerm(tConverter.convert(object.getTerm()));
xstmt.setObject(xo);
}
}
return xstmt;
}
}