Package gem

Examples of gem.PlotForTissue$Group

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    Option charsetOpt = obuilder.withLongName("charset").withRequired(true).withArgument(
        abuilder.withName("charset").withMinimum(1).withMaximum(1).create()).withDescription(
        "The name of the character encoding of the input files").withShortName("c").create();
   
    Group group = gbuilder.withName("Options").withOption(inputDirOpt).withOption(trainingOutputDirOpt)
         .withOption(testOutputDirOpt).withOption(testSplitSizeOpt).withOption(testSplitPctOpt)
         .withOption(splitLocationOpt).withOption(randomSelectionSizeOpt).withOption(randomSelectionPctOpt)
         .withOption(charsetOpt).create();
   
    try {
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    Option bodySeparatorOpt = obuilder.withLongName("bodySeparator").withRequired(false).withArgument(
            abuilder.withName("bodySeparator").withMinimum(1).withMaximum(1).create()).
            withDescription("The separator to use between lines in the body.  Default is \\n.  Useful to change if you wish to have the message be on one line").withShortName("bodySep").create();
    Option helpOpt = DefaultOptionCreator.helpOption();

    Group group = gbuilder.withName("Options").withOption(keyPrefixOpt).withOption(chunkSizeOpt).withOption(
            charsetOpt).withOption(outputDirOpt).withOption(helpOpt).withOption(inputOpt).withOption(subjectOpt).withOption(toOpt)
            .withOption(fromOpt).withOption(bodyOpt).withOption(quotedOpt).withOption(refsOpt).withOption(bodySeparatorOpt)
            .withOption(quotedRegexOpt)
            .withOption(separatorOpt).create();
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      abuilder.withName("v").withMinimum(1).withMaximum(1).create()).withDescription(
      "The vector implementation to use.").withShortName("v").create();
   
    Option helpOpt = DefaultOptionCreator.helpOption();
   
    Group group = gbuilder.withName("Options").withOption(inputOpt).withOption(outputOpt).withOption(
      vectorOpt).withOption(helpOpt).create();

    try {
      Parser parser = new Parser();
      parser.setGroup(group);
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    Option overwriteOutput = obuilder.withLongName("overwrite").withRequired(false).withDescription(
      "If set, overwrite the output directory").withShortName("ow").create();
    Option helpOpt = obuilder.withLongName("help").withDescription("Print out help").withShortName("h")
        .create();
   
    Group group = gbuilder.withName("Options").withOption(minSupportOpt).withOption(analyzerNameOpt)
        .withOption(chunkSizeOpt).withOption(outputDirOpt).withOption(inputDirOpt).withOption(minDFOpt)
        .withOption(maxDFSigmaOpt).withOption(maxDFPercentOpt).withOption(weightOpt).withOption(powerOpt).withOption(minLLROpt)
        .withOption(numReduceTasksOpt).withOption(maxNGramSizeOpt).withOption(overwriteOutput)
        .withOption(helpOpt).withOption(sequentialAccessVectorOpt).withOption(namedVectorOpt)
        .withOption(logNormalizeOpt)
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        .withDescription("Output path, will contain the Decision Forest").create();

    Option helpOpt = obuilder.withLongName("help").withShortName("h")
        .withDescription("Print out help").create();
   
    Group group = gbuilder.withName("Options").withOption(dataOpt).withOption(datasetOpt)
        .withOption(selectionOpt).withOption(noCompleteOpt).withOption(minSplitOpt)
        .withOption(minPropOpt).withOption(seedOpt).withOption(partialOpt).withOption(nbtreesOpt)
        .withOption(outputOpt).withOption(helpOpt).create();
   
    try {
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            withDescription("Only dump out those vectors whose name matches the filter." +
            "  Multiple items may be specified by repeating the argument.").withShortName("fi").create();
    Option helpOpt = obuilder.withLongName("help").withDescription("Print out help").withShortName("h")
            .create();

    Group group = gbuilder.withName("Options").withOption(seqOpt).withOption(outputOpt)
                          .withOption(dictTypeOpt).withOption(dictOpt).withOption(csvOpt)
                          .withOption(vectorAsKeyOpt).withOption(printKeyOpt).withOption(sortVectorsOpt)
                          .withOption(filtersOpt).withOption(helpOpt).withOption(numItemsOpt)
                          .withOption(sizeOpt).withOption(numIndexesPerVectorOpt).create();
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        abuilder.withName("count").withMinimum(1).withMaximum(1).create())
        .withDescription("Generations count.").create();

    Option helpOpt = DefaultOptionCreator.helpOption();

    Group group = gbuilder.withName("Options").withOption(inputOpt).withOption(helpOpt).withOption(labelOpt)
        .withOption(thresholdOpt).withOption(crosspntsOpt).withOption(mutrateOpt).withOption(mutrangeOpt)
        .withOption(mutprecOpt).withOption(popsizeOpt).withOption(gencntOpt).create();

    Parser parser = new Parser();
    parser.setGroup(group);
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        .withArgument(abuilder.withName("verbose").withMinimum(1).withMaximum(1)
        .withDefault("false").create())
        .withDescription("print verbose information, like top-terms in each topic, during iteration")
        .withShortName("v").create();

    Group group = gbuilder.withName("Options").withOption(inputDirOpt).withOption(numTopicsOpt)
        .withOption(alphaOpt).withOption(etaOpt)
        .withOption(maxIterOpt).withOption(burnInOpt).withOption(convergenceOpt)
        .withOption(dictOpt).withOption(reInferDocTopicsOpt)
        .withOption(outputDocFileOpt).withOption(outputTopicFileOpt).withOption(dfsOpt)
        .withOption(numTrainThreadsOpt).withOption(numUpdateThreadsOpt)
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    Option inputOpt = DefaultOptionCreator.inputOption().create();

    Option helpOpt = DefaultOptionCreator.helpOption();

    Group group = gbuilder.withName("Options").withOption(inputOpt).withOption(helpOpt).create();

    Parser parser = new Parser();
    parser.setGroup(group);
    try {
      CommandLine cmdLine = parser.parse(args);
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    Option maxLabelsOpt = obuilder.withLongName("maxLabels").withRequired(false).withArgument(
        abuilder.withName("maxLabels").withMinimum(1).withMaximum(1).create()).withDescription(
        "The maximum number of labels to print per cluster").withShortName("x").create();
    Option helpOpt = DefaultOptionCreator.helpOption();

    Group group = gbuilder.withName("Options").withOption(indexOpt).withOption(idFieldOpt).withOption(outputOpt)
        .withOption(fieldOpt).withOption(seqOpt).withOption(pointsOpt).withOption(helpOpt)
        .withOption(maxLabelsOpt).withOption(minClusterSizeOpt).create();

    try {
      Parser parser = new Parser();
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Related Classes of gem.PlotForTissue$Group

  • ca.uhn.fhir.model.dstu.composite.ResourceReferenceDt
  • ca.uhn.fhir.model.primitive.StringDt
  • com.cloud.bridge.service.controller.s3.S3SerializableServiceImplementation
  • com.cloud.bridge.service.S3SoapServiceImpl
  • com.digitalpebble.behemoth.mahout.SparseVectorsFromBehemoth
  • com.digitalpebble.behemoth.tika.TikaDriver
  • com.sun.xml.bind.v2.schemagen.xmlschema.Particle
  • com.sun.xml.internal.bind.v2.schemagen.xmlschema.Particle
  • edu.isi.karma.mapreduce.function.CreateJSONFromSequenceFile
  • edu.isi.karma.mapreduce.function.CreateSequenceFile
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