Examples of AttributeColumn

Examples of org.gephi.data.attributes.api.AttributeColumn

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    }

    public boolean canReplace(SearchResult result) {
        AttributeController ac = Lookup.getDefault().lookup(AttributeController.class);
        AttributeTable table;
        AttributeColumn column;
        if (result.getFoundNode() != null) {
            table = ac.getModel().getNodeTable();
            column = table.getColumn(result.getFoundColumnIndex());
        } else {
            table = ac.getModel().getEdgeTable();
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Examples of org.gephi.data.attributes.api.AttributeColumn

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        }
        AttributeController ac = Lookup.getDefault().lookup(AttributeController.class);
        Object value;
        String str;
        Attributes attributes;
        AttributeColumn column;

        if (!result.getSearchOptions().isUseRegexReplaceMode()) {
            replacement = Matcher.quoteReplacement(replacement);//Avoid using groups and other regex aspects in the replacement
        }
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Examples of org.gephi.data.attributes.api.AttributeColumn

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        return selectedColumn;
    }

    @Override
    public void setValue(Object value) {
        AttributeColumn column = (AttributeColumn) value;
        this.selectedColumn = column;
    }
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Examples of org.gephi.data.attributes.api.AttributeColumn

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        //Attributes - Manually merge models with new dynamic cols
        attributeModel = Lookup.getDefault().lookup(AttributeController.class).getModel();
        AttributeTable nodeTable = container.getAttributeModel().getNodeTable();
        AttributeTable edgeTable = container.getAttributeModel().getEdgeTable();
        for (AttributeColumn column : nodeTable.getColumns()) {
            AttributeColumn existingCol = attributeModel.getNodeTable().getColumn(column.getTitle());
            if (existingCol == null) {
                if (!column.getOrigin().equals(AttributeOrigin.PROPERTY)) {
                    AttributeType dynamicType = TypeConvertor.getDynamicType(column.getType());
                    if (dynamicType != null && !column.getType().isDynamicType()) {
                        attributeModel.getNodeTable().addColumn(column.getId(), column.getTitle(), dynamicType, column.getOrigin(), null);
                    } else {
                        attributeModel.getNodeTable().addColumn(column.getId(), column.getTitle(), column.getType(), column.getOrigin(), column.getDefaultValue());
                    }
                }
            }

        }
        for (AttributeColumn column : edgeTable.getColumns()) {
            AttributeColumn existingCol = attributeModel.getEdgeTable().getColumn(column.getTitle());
            if (existingCol == null) {
                if (!column.getOrigin().equals(AttributeOrigin.PROPERTY)) {
                    AttributeType dynamicType = TypeConvertor.getDynamicType(column.getType());
                    if (dynamicType != null && !column.getType().isDynamicType()) {
                        attributeModel.getEdgeTable().addColumn(column.getId(), column.getTitle(), dynamicType, column.getOrigin(), null);
                    } else {
                        attributeModel.getEdgeTable().addColumn(column.getId(), column.getTitle(), column.getType(), column.getOrigin(), column.getDefaultValue());
                    }
                }
            } else if (PropertiesColumn.EDGE_WEIGHT.getId().equals(column.getId()) && !existingCol.getType().isDynamicType()) {
                attributeModel.getEdgeTable().replaceColumn(attributeModel.getEdgeTable().getColumn(PropertiesColumn.EDGE_WEIGHT.getIndex()), PropertiesColumn.EDGE_WEIGHT.getId(), PropertiesColumn.EDGE_WEIGHT.getTitle(), AttributeType.DYNAMIC_FLOAT, AttributeOrigin.PROPERTY, null);
            }
        }

        //Get Time Interval Column
        AttributeColumn nodeDynamicColumn = attributeModel.getNodeTable().getColumn(DynamicModel.TIMEINTERVAL_COLUMN);
        AttributeColumn edgeDynamicColumn = attributeModel.getEdgeTable().getColumn(DynamicModel.TIMEINTERVAL_COLUMN);
        if (nodeDynamicColumn == null) {
            nodeDynamicColumn = attributeModel.getNodeTable().addColumn(DynamicModel.TIMEINTERVAL_COLUMN, "Time Interval", AttributeType.TIME_INTERVAL, AttributeOrigin.PROPERTY, null);
        }
        if (edgeDynamicColumn == null) {
            edgeDynamicColumn = attributeModel.getEdgeTable().addColumn(DynamicModel.TIMEINTERVAL_COLUMN, "Time Interval", AttributeType.TIME_INTERVAL, AttributeOrigin.PROPERTY, null);
        }

        //Get Time stamp
        if (dateMode) {
            try {
                point = DynamicUtilities.getDoubleFromXMLDateString(date);
            } catch (Exception e) {
                throw new RuntimeException("The entered date can't be parsed");
            }
        } else {
            point = Double.parseDouble(date);
        }
        DynamicController dynamicController = Lookup.getDefault().lookup(DynamicController.class);
        dynamicController.setTimeFormat(dateMode ? DynamicModel.TimeFormat.DATE : DynamicModel.TimeFormat.DOUBLE);

        //Index existing graph
        Map<String, Node> map = new HashMap<String, Node>();
        for (Node n : graph.getNodes()) {
            String id = n.getNodeData().getId();
            if (id != null && !labelmatching && !id.equalsIgnoreCase(String.valueOf(n.getId()))) {
                map.put(id, n);
            }
            if (n.getNodeData().getLabel() != null && !n.getNodeData().getLabel().isEmpty() && labelmatching) {
                map.put(n.getNodeData().getLabel(), n);
            }
        }

        //Create all nodes
        Set<Node> nodesInDraft = new HashSet<Node>();
        int newNodeCount = 0;
        for (NodeDraftGetter draftNode : container.getNodes()) {
            Node node = null;
            String id = draftNode.getId();
            String label = draftNode.getLabel();
            if (!draftNode.isAutoId() && id != null && map.get(id) != null && !labelmatching) {
                node = map.get(id);
            } else if (label != null && map.get(label) != null && labelmatching) {
                node = map.get(label);
            }

            TimeInterval timeInterval = null;
            if (node == null) {
                //Node is new
                node = factory.newNode(draftNode.isAutoId() ? null : draftNode.getId());
                flushToNode(draftNode, node);
                draftNode.setNode(node);
                newNodeCount++;
            } else {
                timeInterval = (TimeInterval) node.getNodeData().getAttributes().getValue(nodeDynamicColumn.getIndex());
                flushToNodeAttributes(draftNode, node);
                draftNode.setNode(node);
            }
            nodesInDraft.add(node);

            //Add Point
            node.getNodeData().getAttributes().setValue(nodeDynamicColumn.getIndex(), addPoint(timeInterval, point));
        }

        //Push nodes in data structure
        for (NodeDraftGetter draftNode : container.getNodes()) {
            Node n = draftNode.getNode();
            NodeDraftGetter[] parents = draftNode.getParents();
            if (parents != null) {
                for (int i = 0; i < parents.length; i++) {
                    Node parent = parents[i].getNode();
                    graph.addNode(n, parent);
                }
            } else {
                graph.addNode(n);
            }
        }

        //Remove point from all nodes not in draft
        for (Node node : graph.getNodes()) {
            if (!nodesInDraft.contains(node)) {
                TimeInterval timeInterval = (TimeInterval) node.getNodeData().getAttributes().getValue(nodeDynamicColumn.getIndex());
                node.getNodeData().getAttributes().setValue(nodeDynamicColumn.getIndex(), removePoint(timeInterval, point));
            }
        }

        //Create all edges and push to data structure
        Set<Edge> edgesInDraft = new HashSet<Edge>();
        int newEdgeCount = 0;
        for (EdgeDraftGetter draftEdge : container.getEdges()) {
            Node source = draftEdge.getSource().getNode();
            Node target = draftEdge.getTarget().getNode();
            Edge edge = graph.getEdge(source, target);
            TimeInterval timeInterval = null;
            if (edge == null) {
                //Edge is new
                switch (container.getEdgeDefault()) {
                    case DIRECTED:
                        edge = factory.newEdge(draftEdge.isAutoId() ? null : draftEdge.getId(), source, target, draftEdge.getWeight(), true);
                        break;
                    case UNDIRECTED:
                        edge = factory.newEdge(draftEdge.isAutoId() ? null : draftEdge.getId(), source, target, draftEdge.getWeight(), false);
                        break;
                    case MIXED:
                        edge = factory.newEdge(draftEdge.isAutoId() ? null : draftEdge.getId(), source, target, draftEdge.getWeight(), draftEdge.getType().equals(EdgeType.UNDIRECTED) ? false : true);
                        break;
                }
                newEdgeCount++;
                graph.addEdge(edge);
                flushToEdge(draftEdge, edge);
            } else {
                timeInterval = (TimeInterval) edge.getEdgeData().getAttributes().getValue(edgeDynamicColumn.getIndex());
                flushToEdgeAttributes(draftEdge, edge);
            }
            edgesInDraft.add(edge);

            //Add Point
            edge.getEdgeData().getAttributes().setValue(edgeDynamicColumn.getIndex(), addPoint(timeInterval, point));
        }

        //Remove point from all edges not in draft
        for (Edge edge : graph.getEdges()) {
            if (!edgesInDraft.contains(edge)) {
                TimeInterval timeInterval = (TimeInterval) edge.getEdgeData().getAttributes().getValue(edgeDynamicColumn.getIndex());
                edge.getEdgeData().getAttributes().setValue(edgeDynamicColumn.getIndex(), removePoint(timeInterval, point));
            }
        }

        System.out.println("# New Nodes loaded: " + newNodeCount + "\n# New Edges loaded: " + newEdgeCount);
        workspace = null;
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Examples of org.gephi.data.attributes.api.AttributeColumn

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    protected void flushToNodeAttributes(NodeDraftGetter nodeDraft, Node node) {
        if (node.getNodeData().getAttributes() != null) {
            AttributeRow row = (AttributeRow) node.getNodeData().getAttributes();
            for (int i = 0; i < row.countValues(); i++) {
                Object val = row.getValue(i);
                AttributeColumn col = row.getColumnAt(i);
                Object draftValue = nodeDraft.getAttributeRow().getValue(col.getId());
                if (col.getType().isDynamicType()) {
                    if (draftValue == null && val != null) {
                        removePoint(col.getType(), (DynamicType) val, point);
                    } else if (draftValue != null) {
                        DynamicType dynamicValue = addPoint(col.getType(), (DynamicType) val, draftValue, point);
                        row.setValue(col.getIndex(), dynamicValue);
                    }
                } else if (draftValue != null && !col.getOrigin().equals(AttributeOrigin.PROPERTY)) {
                    row.setValue(col.getIndex(), draftValue);
                }
            }
        }
    }
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Examples of org.gephi.data.attributes.api.AttributeColumn

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    protected void flushToEdgeAttributes(EdgeDraftGetter edgeDraft, Edge edge) {
        if (edge.getEdgeData().getAttributes() != null) {
            AttributeRow row = (AttributeRow) edge.getEdgeData().getAttributes();
            for (int i = 0; i < row.countValues(); i++) {
                Object val = row.getValue(i);
                AttributeColumn col = row.getColumnAt(i);
                Object draftValue = edgeDraft.getAttributeRow().getValue(col);
                if (col.getId().equals(PropertiesColumn.EDGE_WEIGHT.getId())) {
                    draftValue = new Float(edgeDraft.getWeight());
                }
                if (col.getType().isDynamicType()) {
                    if (draftValue == null && val != null) {
                        removePoint(col.getType(), (DynamicType) val, point);
                    } else if (draftValue != null) {
                        DynamicType dynamicValue = addPoint(col.getType(), (DynamicType) val, draftValue, point);
                        row.setValue(col.getIndex(), dynamicValue);
                    }
                } else if (draftValue != null && !col.getOrigin().equals(AttributeOrigin.PROPERTY)) {
                    row.setValue(col.getIndex(), draftValue);
                }
            }
        }
    }
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Examples of org.gephi.data.attributes.api.AttributeColumn

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            FilterProcessor processor = new FilterProcessor();
            GraphModel graphModel = Lookup.getDefault().lookup(GraphController.class).getModel();
            result = (HierarchicalGraph) processor.process((AbstractQueryImpl) query, graphModel);
        }
        AttributeModel am = Lookup.getDefault().lookup(AttributeController.class).getModel();
        AttributeColumn nodeCol = am.getNodeTable().getColumn("filter_" + title);
        if (nodeCol == null) {
            nodeCol = am.getNodeTable().addColumn("filter_" + title, title, AttributeType.BOOLEAN, AttributeOrigin.COMPUTED, Boolean.FALSE);
        }
        AttributeColumn edgeCol = am.getEdgeTable().getColumn("filter_" + title);
        if (edgeCol == null) {
            edgeCol = am.getEdgeTable().addColumn("filter_" + title, title, AttributeType.BOOLEAN, AttributeOrigin.COMPUTED, Boolean.FALSE);
        }
        result.readLock();
        for (Node n : result.getNodes()) {
            n.getNodeData().getAttributes().setValue(nodeCol.getIndex(), Boolean.TRUE);
        }
        for (Edge e : result.getEdgesAndMetaEdges()) {
            e.getEdgeData().getAttributes().setValue(edgeCol.getIndex(), Boolean.TRUE);
        }
        result.readUnlock();
        //StatusDisplayer.getDefault().setStatusText(NbBundle.getMessage(FilterControllerImpl.class, "FilterController.exportToColumn.status", title));
    }
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Examples of org.gephi.data.attributes.api.AttributeColumn

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            table.removeColumn(column);
        }
    }

    public AttributeColumn duplicateColumn(AttributeTable table, AttributeColumn column, String title, AttributeType type) {
        AttributeColumn newColumn = addAttributeColumn(table, title, type);
        if (newColumn == null) {
            return null;
        }
        copyColumnDataToOtherColumn(table, column, newColumn);
        return newColumn;
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Examples of org.gephi.data.attributes.api.AttributeColumn

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        return valuesFrequencies;
    }

    public AttributeColumn createBooleanMatchesColumn(AttributeTable table, AttributeColumn column, String newColumnTitle, Pattern pattern) {
        if (pattern != null) {
            AttributeColumn newColumn = addAttributeColumn(table, newColumnTitle, AttributeType.BOOLEAN);
            if (newColumn == null) {
                return null;
            }
            Matcher matcher;
            Object value;
            for (Attributes row : getTableAttributeRows(table)) {
                value = row.getValue(column.getIndex());
                if (value != null) {
                    matcher = pattern.matcher(value.toString());
                } else {
                    matcher = pattern.matcher("");
                }
                row.setValue(newColumn.getIndex(), matcher.matches());
            }
            return newColumn;
        } else {
            return null;
        }
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Examples of org.gephi.data.attributes.api.AttributeColumn

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        }
    }

    public AttributeColumn createFoundGroupsListColumn(AttributeTable table, AttributeColumn column, String newColumnTitle, Pattern pattern) {
        if (pattern != null) {
            AttributeColumn newColumn = addAttributeColumn(table, newColumnTitle, AttributeType.LIST_STRING);
            if (newColumn == null) {
                return null;
            }
            Matcher matcher;
            Object value;
            ArrayList<String> foundGroups = new ArrayList<String>();
            for (Attributes attributes : getTableAttributeRows(table)) {
                value = attributes.getValue(column.getIndex());
                if (value != null) {
                    matcher = pattern.matcher(value.toString());
                } else {
                    matcher = pattern.matcher("");
                }
                while (matcher.find()) {
                    foundGroups.add(matcher.group());
                }
                if (foundGroups.size() > 0) {
                    attributes.setValue(newColumn.getIndex(), new StringList(foundGroups.toArray(new String[0])));
                    foundGroups.clear();
                } else {
                    attributes.setValue(newColumn.getIndex(), null);
                }
            }
            return newColumn;
        } else {
            return null;
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