/*
* Copyright (c) 2012. The Genome Analysis Centre, Norwich, UK
* MISO project contacts: Robert Davey, Mario Caccamo @ TGAC
* *********************************************************************
*
* This file is part of MISO.
*
* MISO is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* MISO is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with MISO. If not, see <http://www.gnu.org/licenses/>.
*
* *********************************************************************
*/
package uk.ac.bbsrc.tgac.miso.core.test;
import junit.framework.Assert;
import org.junit.After;
import org.junit.Before;
import org.junit.Test;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import uk.ac.bbsrc.tgac.miso.core.data.Barcodable;
import uk.ac.bbsrc.tgac.miso.core.data.Library;
import uk.ac.bbsrc.tgac.miso.core.data.Sample;
import uk.ac.bbsrc.tgac.miso.core.data.Status;
import uk.ac.bbsrc.tgac.miso.core.data.impl.StatusImpl;
import uk.ac.bbsrc.tgac.miso.core.data.impl.illumina.IlluminaRun;
import uk.ac.bbsrc.tgac.miso.core.data.type.HealthType;
import uk.ac.bbsrc.tgac.miso.core.data.type.PlatformType;
import uk.ac.bbsrc.tgac.miso.core.event.AlerterService;
import uk.ac.bbsrc.tgac.miso.core.event.ResponderService;
import uk.ac.bbsrc.tgac.miso.core.exception.MisoNamingException;
import uk.ac.bbsrc.tgac.miso.core.factory.DataObjectFactory;
import uk.ac.bbsrc.tgac.miso.core.factory.TgacDataObjectFactory;
import uk.ac.bbsrc.tgac.miso.core.service.naming.DefaultEntityNamingScheme;
import uk.ac.bbsrc.tgac.miso.core.service.naming.DefaultLibraryNamingScheme;
import uk.ac.bbsrc.tgac.miso.core.service.naming.DefaultSampleNamingScheme;
import uk.ac.bbsrc.tgac.miso.core.service.naming.MisoNamingScheme;
import java.util.HashSet;
import java.util.Set;
/**
* uk.ac.bbsrc.tgac.miso.core.test
* <p/>
* Info
*
* @author Rob Davey
* @date 26/09/11
* @since 0.1.2
*/
public class NamingTests {
protected static final Logger log = LoggerFactory.getLogger(NamingTests.class);
private DataObjectFactory dataObjectFactory;
private MisoNamingScheme<Sample> sampleNamingScheme;
private MisoNamingScheme<Library> libraryNamingScheme;
@Before
public void setUp() {
dataObjectFactory = new TgacDataObjectFactory();
sampleNamingScheme = new DefaultSampleNamingScheme();
libraryNamingScheme = new DefaultLibraryNamingScheme();
}
@Test
public void testSampleNaming() throws MisoNamingException {
//DefaultEntityNamingScheme<Sample> entityNameValidationScheme = new DefaultEntityNamingScheme(Sample.class);
Sample s = dataObjectFactory.getSample();
s.setId(1L);
String name = sampleNamingScheme.generateNameFor("name", s);
s.setName(name);
Assert.assertTrue(sampleNamingScheme.validateField("name", s.getName()));
s.setAlias("RD_S1_Foo.bar");
Assert.assertTrue(sampleNamingScheme.validateField("alias", s.getAlias()));
log.info("Sample naming scheme valid");
}
@Test
public void testLibraryNaming() throws MisoNamingException {
//DefaultEntityNamingScheme<Library> entityNameValidationScheme = new DefaultEntityNamingScheme(Library.class);
Library l = dataObjectFactory.getLibrary();
l.setId(1L);
String name = libraryNamingScheme.generateNameFor("name", l);
l.setName(name);
Assert.assertTrue(libraryNamingScheme.validateField("name", l.getName()));
l.setAlias("RD_L1-1_Foo.bar");
Assert.assertTrue(libraryNamingScheme.validateField("alias", l.getAlias()));
log.info("Library naming scheme valid");
}
@After
public void tearDown() {
dataObjectFactory = null;
sampleNamingScheme = null;
libraryNamingScheme = null;
}
}