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* or more contributor license agreements.  See the NOTICE file

* distributed with this work for additional information

* regarding copyright ownership.  The ASF licenses this file

* to you under the Apache License, Version 2.0 (the

* "License"); you may not use this file except in compliance

* with the License.  You may obtain a copy of the License at

*

*   http://www.apache.org/licenses/LICENSE-2.0

*

* Unless required by applicable law or agreed to in writing,

* software distributed under the License is distributed on an

* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY

* KIND, either express or implied.  See the License for the

* specific language governing permissions and limitations

* under the License.

*/

  @Test

    public void test() throws JDOMException {

    GeniaPosTrainingDataExtractor gptde = new GeniaPosTrainingDataExtractor("test/data/GENIAcorpus3.02.pos.test.xml"); 

    TaggedAbstract taggedAbstract = gptde.next();

    TaggedSentence taggedSentence;

    TaggedWord taggedWord;

   

    //test one full sentence from title

    taggedSentence = taggedAbstract.getTaggedSentences().get(0);

    taggedWord = taggedSentence.getTaggedWords().get(0);

    assertEquals("Pancreatic", taggedWord.getWord());

    assertEquals("JJ", taggedWord.getTag());

    taggedWord = taggedSentence.getTaggedWords().get(1);

    assertEquals("development", taggedWord.getWord());

    assertEquals("NN", taggedWord.getTag());

    taggedWord = taggedSentence.getTaggedWords().get(2);

    assertEquals("and", taggedWord.getWord());

    assertEquals("CC", taggedWord.getTag());

    taggedWord = taggedSentence.getTaggedWords().get(3);

    assertEquals("maturation", taggedWord.getWord());

    assertEquals("NN", taggedWord.getTag());

    taggedWord = taggedSentence.getTaggedWords().get(4);

    assertEquals("of", taggedWord.getWord());

    assertEquals("IN", taggedWord.getTag());

    taggedWord = taggedSentence.getTaggedWords().get(5);

    assertEquals("the", taggedWord.getWord());

    assertEquals("DT", taggedWord.getTag());

    taggedWord = taggedSentence.getTaggedWords().get(6);

    assertEquals("islet", taggedWord.getWord());

    assertEquals("NN", taggedWord.getTag());

    taggedWord = taggedSentence.getTaggedWords().get(7);

    assertEquals("B", taggedWord.getWord());

    assertEquals("NN", taggedWord.getTag());

    taggedWord = taggedSentence.getTaggedWords().get(8);

    assertEquals("cell", taggedWord.getWord());

    assertEquals("NN", taggedWord.getTag());

    taggedWord = taggedSentence.getTaggedWords().get(9);

    assertEquals(".", taggedWord.getWord());

    assertEquals(".", taggedWord.getTag());

    //test one full sentence from abstract

    //<sentence><w c="DT">The</w> <w c="CD">three</w> <w c="NNS">compartments</w> <w c="VBP">are</w> <w c="VBN">thought</w> <w c="TO">to</w> <w c="VB">be</w> <w c="IN">of</w> <w c="JJ">common</w> <w c="JJ">endodermal</w> <w c="NN">origin</w><w c=":">;</w> <w c="IN">in</w> <w c="NN">contrast</w> <w c="TO">to</w> <w c="JJR">earlier</w> <w c="NNS">hypotheses</w><w c=",">,</w> <w c="WDT">which</w> <w c="VBD">suggested</w> <w c="IN">that</w> <w c="DT">the</w> <w c="JJ">endocrine</w> <w c="NN">compartment</w> <w c="VBD">was</w> <w c="IN">of</w> <w c="JJ">neuroectodermal</w> <w c="NN">origin</w><w c=".">.</w></sentence>

    taggedSentence = taggedAbstract.getTaggedSentences().get(5);

    taggedWord = taggedSentence.getTaggedWords().get(0);

    assertEquals("The", taggedWord.getWord());

    assertEquals("DT", taggedWord.getTag());

   

    taggedSentence = taggedAbstract.getTaggedSentences().get(1);

    assertEquals(6, taggedSentence.getTaggedWords().size());

    taggedSentence = taggedAbstract.getTaggedSentences().get(2);

    taggedWord = taggedSentence.getTaggedWords().get(0);

    assertEquals("Pancreas", taggedWord.getWord());

    assertEquals("NN", taggedWord.getTag());

    taggedWord = taggedSentence.getTaggedWords().get(11);

    assertEquals("anlage", taggedWord.getWord());

    assertEquals("NNS", taggedWord.getTag());

    taggedWord = taggedSentence.getTaggedWords().get(17);

    assertEquals(".", taggedWord.getWord());

    assertEquals(".", taggedWord.getTag());

   

    taggedAbstract = gptde.next();

    taggedSentence = taggedAbstract.getTaggedSentences().get(4);

    taggedWord = taggedSentence.getTaggedWords().get(0);

    assertEquals("We", taggedWord.getWord());

    assertEquals("PRP", taggedWord.getTag());

    taggedWord = taggedSentence.getTaggedWords().get(37);

    assertEquals("non-octamer", taggedWord.getWord());

    assertEquals("JJ", taggedWord.getTag());

   

  }

}