public void test() throws JDOMException {
GeniaPosTrainingDataExtractor gptde = new GeniaPosTrainingDataExtractor("test/data/GENIAcorpus3.02.pos.test.xml");
TaggedAbstract taggedAbstract = gptde.next();
TaggedSentence taggedSentence;
TaggedWord taggedWord;
//test one full sentence from title
taggedSentence = taggedAbstract.getTaggedSentences().get(0);
taggedWord = taggedSentence.getTaggedWords().get(0);
assertEquals("Pancreatic", taggedWord.getWord());
assertEquals("JJ", taggedWord.getTag());
taggedWord = taggedSentence.getTaggedWords().get(1);
assertEquals("development", taggedWord.getWord());
assertEquals("NN", taggedWord.getTag());
taggedWord = taggedSentence.getTaggedWords().get(2);
assertEquals("and", taggedWord.getWord());
assertEquals("CC", taggedWord.getTag());
taggedWord = taggedSentence.getTaggedWords().get(3);
assertEquals("maturation", taggedWord.getWord());
assertEquals("NN", taggedWord.getTag());
taggedWord = taggedSentence.getTaggedWords().get(4);
assertEquals("of", taggedWord.getWord());
assertEquals("IN", taggedWord.getTag());
taggedWord = taggedSentence.getTaggedWords().get(5);
assertEquals("the", taggedWord.getWord());
assertEquals("DT", taggedWord.getTag());
taggedWord = taggedSentence.getTaggedWords().get(6);
assertEquals("islet", taggedWord.getWord());
assertEquals("NN", taggedWord.getTag());
taggedWord = taggedSentence.getTaggedWords().get(7);
assertEquals("B", taggedWord.getWord());
assertEquals("NN", taggedWord.getTag());
taggedWord = taggedSentence.getTaggedWords().get(8);
assertEquals("cell", taggedWord.getWord());
assertEquals("NN", taggedWord.getTag());
taggedWord = taggedSentence.getTaggedWords().get(9);
assertEquals(".", taggedWord.getWord());
assertEquals(".", taggedWord.getTag());
//test one full sentence from abstract
//<sentence><w c="DT">The</w> <w c="CD">three</w> <w c="NNS">compartments</w> <w c="VBP">are</w> <w c="VBN">thought</w> <w c="TO">to</w> <w c="VB">be</w> <w c="IN">of</w> <w c="JJ">common</w> <w c="JJ">endodermal</w> <w c="NN">origin</w><w c=":">;</w> <w c="IN">in</w> <w c="NN">contrast</w> <w c="TO">to</w> <w c="JJR">earlier</w> <w c="NNS">hypotheses</w><w c=",">,</w> <w c="WDT">which</w> <w c="VBD">suggested</w> <w c="IN">that</w> <w c="DT">the</w> <w c="JJ">endocrine</w> <w c="NN">compartment</w> <w c="VBD">was</w> <w c="IN">of</w> <w c="JJ">neuroectodermal</w> <w c="NN">origin</w><w c=".">.</w></sentence>
taggedSentence = taggedAbstract.getTaggedSentences().get(5);
taggedWord = taggedSentence.getTaggedWords().get(0);
assertEquals("The", taggedWord.getWord());
assertEquals("DT", taggedWord.getTag());
taggedSentence = taggedAbstract.getTaggedSentences().get(1);
assertEquals(6, taggedSentence.getTaggedWords().size());
taggedSentence = taggedAbstract.getTaggedSentences().get(2);
taggedWord = taggedSentence.getTaggedWords().get(0);
assertEquals("Pancreas", taggedWord.getWord());
assertEquals("NN", taggedWord.getTag());
taggedWord = taggedSentence.getTaggedWords().get(11);
assertEquals("anlage", taggedWord.getWord());
assertEquals("NNS", taggedWord.getTag());
taggedWord = taggedSentence.getTaggedWords().get(17);
assertEquals(".", taggedWord.getWord());
assertEquals(".", taggedWord.getTag());
taggedAbstract = gptde.next();
taggedSentence = taggedAbstract.getTaggedSentences().get(4);
taggedWord = taggedSentence.getTaggedWords().get(0);
assertEquals("We", taggedWord.getWord());
assertEquals("PRP", taggedWord.getTag());
taggedWord = taggedSentence.getTaggedWords().get(37);
assertEquals("non-octamer", taggedWord.getWord());
assertEquals("JJ", taggedWord.getTag());
}