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broadinstitute
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genotyper
Subpackages of org.broadinstitute.gatk.tools.walkers.genotyper
org.broadinstitute.gatk.tools.walkers.genotyper.afcalc
All Classes in org.broadinstitute.gatk.tools.walkers.genotyper
org.broadinstitute.gatk.tools.walkers.genotyper.AFPriorProvider
org.broadinstitute.gatk.tools.walkers.genotyper.AlleleLikelihoodMatrixMapper
org.broadinstitute.gatk.tools.walkers.genotyper.AlleleList
org.broadinstitute.gatk.tools.walkers.genotyper.AlleleListPermutation
org.broadinstitute.gatk.tools.walkers.genotyper.AlleleListUnitTester
org.broadinstitute.gatk.tools.walkers.genotyper.AlleleListUtils
org.broadinstitute.gatk.tools.walkers.genotyper.AlleleListUtils$ActualPermutation
org.broadinstitute.gatk.tools.walkers.genotyper.AlleleListUtils$AsList
org.broadinstitute.gatk.tools.walkers.genotyper.AlleleListUtils$NonPermutation
org.broadinstitute.gatk.tools.walkers.genotyper.AlleleListUtilsUnitTest
org.broadinstitute.gatk.tools.walkers.genotyper.ArtificialReadPileupTestProvider
org.broadinstitute.gatk.tools.walkers.genotyper.ConsensusAlleleCounter
org.broadinstitute.gatk.tools.walkers.genotyper.CustomAFPriorProvider
org.broadinstitute.gatk.tools.walkers.genotyper.DiploidSNPGenotypeLikelihoods
org.broadinstitute.gatk.tools.walkers.genotyper.ErrorModel
org.broadinstitute.gatk.tools.walkers.genotyper.GeneralPloidyGenotypeLikelihoods
org.broadinstitute.gatk.tools.walkers.genotyper.GeneralPloidyGenotypeLikelihoods$SumIterator
org.broadinstitute.gatk.tools.walkers.genotyper.GeneralPloidyGenotypeLikelihoodsCalculationModel
org.broadinstitute.gatk.tools.walkers.genotyper.GeneralPloidyGenotypeLikelihoodsCalculationModel$PoolGenotypeData
org.broadinstitute.gatk.tools.walkers.genotyper.GeneralPloidyGenotypeLikelihoodsUnitTest
org.broadinstitute.gatk.tools.walkers.genotyper.GeneralPloidyIndelGenotypeLikelihoods
org.broadinstitute.gatk.tools.walkers.genotyper.GeneralPloidyIndelGenotypeLikelihoodsCalculationModel
org.broadinstitute.gatk.tools.walkers.genotyper.GeneralPloidySNPGenotypeLikelihoods
org.broadinstitute.gatk.tools.walkers.genotyper.GeneralPloidySNPGenotypeLikelihoodsCalculationModel
org.broadinstitute.gatk.tools.walkers.genotyper.GenotypeAlleleCounts
org.broadinstitute.gatk.tools.walkers.genotyper.GenotypeAlleleCountsUnitTest
org.broadinstitute.gatk.tools.walkers.genotyper.GenotypeLikelihoodCalculator
org.broadinstitute.gatk.tools.walkers.genotyper.GenotypeLikelihoodCalculatorUnitTest
org.broadinstitute.gatk.tools.walkers.genotyper.GenotypeLikelihoodCalculators
org.broadinstitute.gatk.tools.walkers.genotyper.GenotypeLikelihoodsCalculationModel
org.broadinstitute.gatk.tools.walkers.genotyper.GenotypePriors
org.broadinstitute.gatk.tools.walkers.genotyper.GenotypingData
org.broadinstitute.gatk.tools.walkers.genotyper.GenotypingDataUnitTest
org.broadinstitute.gatk.tools.walkers.genotyper.GenotypingEngine
org.broadinstitute.gatk.tools.walkers.genotyper.GenotypingEngine$OutputAlleleSubset
org.broadinstitute.gatk.tools.walkers.genotyper.GenotypingLikelihoods
org.broadinstitute.gatk.tools.walkers.genotyper.GenotypingModel
org.broadinstitute.gatk.tools.walkers.genotyper.HeterogeneousPloidyModel
org.broadinstitute.gatk.tools.walkers.genotyper.HeterozygosityAFPriorProvider
org.broadinstitute.gatk.tools.walkers.genotyper.HomogeneousPloidyModel
org.broadinstitute.gatk.tools.walkers.genotyper.HomogeneousPloidyModelUnitTest
org.broadinstitute.gatk.tools.walkers.genotyper.IndelGenotypeLikelihoodsCalculationModel
org.broadinstitute.gatk.tools.walkers.genotyper.IndelGenotypeLikelihoodsUnitTest
org.broadinstitute.gatk.tools.walkers.genotyper.IndexedAlleleList
org.broadinstitute.gatk.tools.walkers.genotyper.IndexedAlleleListUnitTest
org.broadinstitute.gatk.tools.walkers.genotyper.IndexedSampleList
org.broadinstitute.gatk.tools.walkers.genotyper.IndexedSampleListUnitTest
org.broadinstitute.gatk.tools.walkers.genotyper.InfiniteRandomMatingPopulationModel
org.broadinstitute.gatk.tools.walkers.genotyper.InfiniteRandomMatingPopulationModelUnitTest
org.broadinstitute.gatk.tools.walkers.genotyper.PloidyModel
org.broadinstitute.gatk.tools.walkers.genotyper.PoolGenotypePriors
org.broadinstitute.gatk.tools.walkers.genotyper.ProbabilityVector
org.broadinstitute.gatk.tools.walkers.genotyper.ReadLikelihoodsUnitTester
org.broadinstitute.gatk.tools.walkers.genotyper.SNPGenotypeLikelihoodsCalculationModel
org.broadinstitute.gatk.tools.walkers.genotyper.SNPGenotypeLikelihoodsCalculationModel$BAQedPileupElement
org.broadinstitute.gatk.tools.walkers.genotyper.SNPGenotypeLikelihoodsCalculationModel$SampleGenotypeData
org.broadinstitute.gatk.tools.walkers.genotyper.SampleList
org.broadinstitute.gatk.tools.walkers.genotyper.SampleListUnitTester
org.broadinstitute.gatk.tools.walkers.genotyper.SampleListUtils
org.broadinstitute.gatk.tools.walkers.genotyper.SampleListUtils$AsList
org.broadinstitute.gatk.tools.walkers.genotyper.SampleListUtils$AsSet
org.broadinstitute.gatk.tools.walkers.genotyper.SampleListUtilsUnitTest
org.broadinstitute.gatk.tools.walkers.genotyper.StandardCallerArgumentCollectionUnitTest
org.broadinstitute.gatk.tools.walkers.genotyper.UnifiedArgumentCollection
org.broadinstitute.gatk.tools.walkers.genotyper.UnifiedGenotyper
org.broadinstitute.gatk.tools.walkers.genotyper.UnifiedGenotyper$UGStatistics
org.broadinstitute.gatk.tools.walkers.genotyper.UnifiedGenotyperEngineUnitTest
org.broadinstitute.gatk.tools.walkers.genotyper.UnifiedGenotyperGeneralPloidySuite1IntegrationTest
org.broadinstitute.gatk.tools.walkers.genotyper.UnifiedGenotyperGeneralPloidySuite2IntegrationTest
org.broadinstitute.gatk.tools.walkers.genotyper.UnifiedGenotyperGeneralPloidyTestExecutor
org.broadinstitute.gatk.tools.walkers.genotyper.UnifiedGenotyperIndelCallingIntegrationTest
org.broadinstitute.gatk.tools.walkers.genotyper.UnifiedGenotyperIntegrationTest
org.broadinstitute.gatk.tools.walkers.genotyper.UnifiedGenotyperLargeScaleTest
org.broadinstitute.gatk.tools.walkers.genotyper.UnifiedGenotyperNormalCallingIntegrationTest
org.broadinstitute.gatk.tools.walkers.genotyper.UnifiedGenotypingEngine
org.broadinstitute.gatk.tools.walkers.genotyper.VariantCallContext
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