List of stage3EquivalenceParameters() Examples

Examples of stage3EquivalenceParameters()

org.openbel.framework.compiler.DefaultPhaseTwo.stage3EquivalenceParameters()
Executes stage three parameter equivalencing of the merged {@link ProtoNetwork}.
Note this method will modify the proto-network {@code protoNetwork}.
@param protoNetwork {@link ProtoNetwork}, the merged proto-network to equivalence @param indexes {@link Set} of {@link EquivalenceDataIndex} equivalencedata indexes, which cannot be null @return int Number of parameters equivalenced @throws IOException Thrown if an I/O error occurred during equivalencing @throws InvalidArgument Thrown if indexes is null
org.openbel.framework.compiler.PhaseTwoImpl.stage3EquivalenceParameters()
{@inheritDoc}

Examples of org.openbel.framework.compiler.DefaultPhaseTwo.stage3EquivalenceParameters()

        assertThat("equivs set is empty", equivs.size(), greaterThan(0));


        // test equivalencing
        try {
            // test parameter equivalencer
            int params = p2.stage3EquivalenceParameters(pn, equivs);
            assertThat("incorrect number of parmeter equivalences", params, is(9));


            // test term equivalencer
            int terms = p2.stage3EquivalenceTerms(pn);
            assertThat("incorrect number of term equivalences", terms, is(5));

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Examples of org.openbel.framework.compiler.PhaseTwoImpl.stage3EquivalenceParameters()

        assertThat("equivs set is empty", equivs.size(), greaterThan(0));


        // test equivalencing
        try {
            // test parameter equivalencer
            int params = p2.stage3EquivalenceParameters(pn, equivs);
            assertThat("incorrect number of parmeter equivalences", params, is(9));


            // test term equivalencer
            int terms = p2.stage3EquivalenceTerms(pn);
            assertThat("incorrect number of term equivalences", terms, is(5));

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