List of stage1BELValidation() Examples

Examples of stage1BELValidation()

org.openbel.framework.compiler.DefaultPhaseOne.stage1BELValidation()
Executes stage one validation of a BEL file.
This stage consists of:
1. Syntactic validation of the BEL file by executing the {@link BELParser}
2. Conversion of the {@link org.openbel.bel.model.BELObject BELScript model} to thecommon model (defined by both {@link BELModelObject} and{@link BELObject})
3. Syntactic validation of the converted model against its external resources
@param f {@link File}, the BELScript file @return A non-null list of validation errors @throws ValidationError Thrown if the file fails validation

Examples of org.openbel.framework.compiler.DefaultPhaseOne.stage1BELValidation()

        }


        // read in BEL document and compile to proto network
        final File doc = new File(DOC_PATH);
        assertThat("test BEL document cannot be read", doc.canRead(), is(true));
        Stage1Output p1s1 = p1.stage1BELValidation(doc);
        final ProtoNetworkBuilder bldr = new ProtoNetworkBuilder(p1s1.getDocument());
        pn = bldr.buildProtoNetwork();


        // Create system configuration, BELFRAMEWORK_HOME must be set.
        try {

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