List of scpFrom() Examples

Examples of scpFrom()

org.apache.airavata.gsi.ssh.api.Cluster.scpFrom()
This will copy a remote file in path rFile to local file lFile @param remoteFile remote file path, this has to be a full qualified path @param localFile This is the local file to copy, this can be a directory too @throws SSHApiException
org.apache.airavata.gsi.ssh.util.SSHUtils.scpFrom()
This method will copy a remote file to a local directory @param remoteFile remote file path, this has to be a full qualified path @param localFile This is the local file to copy, this can be a directory too @param session @return returns the final local file path of the new file came from the remote resource

Examples of org.apache.airavata.gsi.ssh.api.Cluster.scpFrom()

                        outputArray.clear();
                        for(String key:strings) {
                            ActualParameter actualParameter1 = (ActualParameter) output.get(key);
                            if("URI".equals(actualParameter1.getType().getType().toString())){
                              String downloadFile = MappingFactory.toString(actualParameter1);
                              cluster.scpFrom(downloadFile, outputDataDir);
                              String fileName = downloadFile.substring(downloadFile.lastIndexOf(File.separatorChar)+1, downloadFile.length());
                              String localFile = outputDataDir +  File.separator +fileName;
                jobExecutionContext.addOutputFile(localFile);
                MappingFactory.fromString(actualParameter1, localFile);
                DataObjectType dataObjectType = new DataObjectType();

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Examples of org.apache.airavata.gsi.ssh.api.Cluster.scpFrom()

                            }
                        }
                        break;
                    } else {
                        String valueList = outputList.get(0);
                        cluster.scpFrom(app.getOutputDataDirectory() + File.separator + valueList, outputDataDir);
                        jobExecutionContext.addOutputFile(outputDataDir + File.separator + valueList);
                        DataObjectType dataObjectType = new DataObjectType();
                        dataObjectType.setValue(valueList);
                        dataObjectType.setKey(paramName);
                        dataObjectType.setType(DataType.URI);

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Examples of org.apache.airavata.gsi.ssh.api.Cluster.scpFrom()




            localStdOutFile = new File(outputDataDir + File.separator + timeStampedServiceName + "stdout");
            localStdErrFile = new File(outputDataDir + File.separator + timeStampedServiceName + "stderr");
//            cluster.makeDirectory(outputDataDir);
            cluster.scpFrom(app.getStandardOutput(), localStdOutFile.getAbsolutePath());
            Thread.sleep(1000);
            cluster.scpFrom(app.getStandardError(), localStdErrFile.getAbsolutePath());
            Thread.sleep(1000);


            String stdOutStr = GFacUtils.readFileToString(localStdOutFile.getAbsolutePath());

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Examples of org.apache.airavata.gsi.ssh.api.Cluster.scpFrom()

            localStdOutFile = new File(outputDataDir + File.separator + timeStampedServiceName + "stdout");
            localStdErrFile = new File(outputDataDir + File.separator + timeStampedServiceName + "stderr");
//            cluster.makeDirectory(outputDataDir);
            cluster.scpFrom(app.getStandardOutput(), localStdOutFile.getAbsolutePath());
            Thread.sleep(1000);
            cluster.scpFrom(app.getStandardError(), localStdErrFile.getAbsolutePath());
            Thread.sleep(1000);


            String stdOutStr = GFacUtils.readFileToString(localStdOutFile.getAbsolutePath());
            String stdErrStr = GFacUtils.readFileToString(localStdErrFile.getAbsolutePath());
            status.setTransferState(TransferState.COMPLETE);

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Examples of org.apache.airavata.gsi.ssh.api.Cluster.scpFrom()

                    if (outputList.size() == 0 || outputList.get(0).isEmpty()) {
                        OutputUtils.fillOutputFromStdout(output, stdOutStr, stdErrStr,outputArray);
                        break;
                    } else {
                        String valueList = outputList.get(0);
                        cluster.scpFrom(app.getOutputDataDirectory() + File.separator + valueList, outputDataDir);
                        jobExecutionContext.addOutputFile(outputDataDir + File.separator + valueList);
                        DataObjectType dataObjectType = new DataObjectType();
                        dataObjectType.setValue(valueList);
                        dataObjectType.setKey(paramName);
                        dataObjectType.setType(DataType.URI);

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Examples of org.apache.airavata.gsi.ssh.api.Cluster.scpFrom()

            String timeStampedServiceName = GFacUtils.createUniqueNameForService(jobExecutionContext.getServiceName());
            File localStdOutFile = File.createTempFile(timeStampedServiceName, "stdout");
            File localStdErrFile = File.createTempFile(timeStampedServiceName, "stderr");


            log.info("Downloading file : " + app.getStandardError() + " to : " + localStdErrFile.getAbsolutePath());
            cluster.scpFrom(app.getStandardOutput(), localStdOutFile.getAbsolutePath());
            log.info("Downloading file : " + app.getStandardOutput() + " to : " + localStdOutFile.getAbsolutePath());
            cluster.scpFrom(app.getStandardError(), localStdErrFile.getAbsolutePath());


            String stdOutStr = GFacUtils.readFileToString(localStdOutFile.getAbsolutePath());
            String stdErrStr = GFacUtils.readFileToString(localStdErrFile.getAbsolutePath());

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Examples of org.apache.airavata.gsi.ssh.api.Cluster.scpFrom()

            File localStdErrFile = File.createTempFile(timeStampedServiceName, "stderr");


            log.info("Downloading file : " + app.getStandardError() + " to : " + localStdErrFile.getAbsolutePath());
            cluster.scpFrom(app.getStandardOutput(), localStdOutFile.getAbsolutePath());
            log.info("Downloading file : " + app.getStandardOutput() + " to : " + localStdOutFile.getAbsolutePath());
            cluster.scpFrom(app.getStandardError(), localStdErrFile.getAbsolutePath());


            String stdOutStr = GFacUtils.readFileToString(localStdOutFile.getAbsolutePath());
            String stdErrStr = GFacUtils.readFileToString(localStdErrFile.getAbsolutePath());


            Map<String, ActualParameter> stringMap = new HashMap<String, ActualParameter>();

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Examples of org.apache.airavata.gsi.ssh.util.SSHUtils.scpFrom()

                7512, 17280000,certificateLocation);
        ServerInfo serverInfo = new ServerInfo("ogce" ,"trestles.sdsc.edu");
        SSHUtils SSHUtils = new SSHUtils(serverInfo, authenticationInfo, this.certificateLocation, new ConfigReader());
        SSHUtils.scpTo(rFilePath, lFilePath);
        Thread.sleep(1000);
        SSHUtils.scpFrom(File.separator + "tmp" + File.separator + "pom.xml", System.getProperty("basedir"));
    }




}

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