List of safeDelCostY() Examples

Examples of safeDelCostY()

bgu.bio.algorithms.graphs.hsa.matchers.BipartiteCavityMatcher.safeDelCostY()
@param ix @return

Examples of bgu.bio.algorithms.graphs.hsa.matchers.BipartiteCavityMatcher.safeDelCostY()

          return nextGroupIx;
        }
      }
    }


    pruneAll = -matcher.safeDelCostY(sFromNeighborIx);// -s.weights[sTo][sFromNeighborIx];
    for (int u = 0; u < s.outAdjLists[sTo].length; ++u) {
      pruneAll += matcher.safeDelCostY(u);// s.weights[sTo][u];
    }


    initWeight = pruneAll + s.smoothCost[sTo];

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Examples of bgu.bio.algorithms.graphs.hsa.matchers.BipartiteCavityMatcher.safeDelCostY()

      }
    }


    pruneAll = -matcher.safeDelCostY(sFromNeighborIx);// -s.weights[sTo][sFromNeighborIx];
    for (int u = 0; u < s.outAdjLists[sTo].length; ++u) {
      pruneAll += matcher.safeDelCostY(u);// s.weights[sTo][u];
    }


    initWeight = pruneAll + s.smoothCost[sTo];


    for (int u = 0; u < s.outAdjLists[sTo].length; ++u) {

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Examples of bgu.bio.algorithms.graphs.hsa.matchers.BipartiteCavityMatcher.safeDelCostY()


    for (int u = 0; u < s.outAdjLists[sTo].length; ++u) {
      if (u != sFromNeighborIx) {
        if (MathOperations.equals(cost, initWeight
            + matchers[tFrom][sTo].getMatchCostXY(tToNeighborIx, u)
            - matcher.safeDelCostY(u))) { // s.weights[sTo][u])) {
          if (s.outDeg(sTo) != 2) {
            ++nextGroupIx;
          }
          nextGroupIx = traceback(t, s, alignment, tFrom,
              tToNeighborIx, sTo, u, nextGroupIx);

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