Examples of resetQcResults()

Examples of eu.isas.peptideshaker.myparameters.PSParameter.resetQcResults()

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            String proteinKey) throws SQLException, IOException, ClassNotFoundException, InterruptedException, MzMLUnmarshallerException {

        SequenceFactory sequenceFactory = SequenceFactory.getInstance();
        PSParameter psParameter = new PSParameter();
        psParameter = (PSParameter) identification.getProteinMatchParameter(proteinKey, psParameter);
        psParameter.resetQcResults();

        if (!psParameter.isManualValidation()) {

            if (sequenceFactory.concatenatedTargetDecoy()) {
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Examples of eu.isas.peptideshaker.myparameters.PSParameter.resetQcResults()

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            throws SQLException, IOException, ClassNotFoundException, InterruptedException, MzMLUnmarshallerException {

        SequenceFactory sequenceFactory = SequenceFactory.getInstance();
        PSParameter psParameter = new PSParameter();
        psParameter = (PSParameter) identification.getPeptideMatchParameter(peptideKey, psParameter);
        psParameter.resetQcResults();

        if (sequenceFactory.concatenatedTargetDecoy()) {
            TargetDecoyMap targetDecoyMap = peptideMap.getTargetDecoyMap(peptideMap.getCorrectedKey(psParameter.getSpecificMapKey()));
            TargetDecoyResults targetDecoyResults = targetDecoyMap.getTargetDecoyResults();
            double peptideThreshold = targetDecoyResults.getScoreLimit();
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Examples of eu.isas.peptideshaker.myparameters.PSParameter.resetQcResults()

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            PsmSpecificMap psmMap, String spectrumKey) throws SQLException, IOException, ClassNotFoundException, InterruptedException, MzMLUnmarshallerException {

        SequenceFactory sequenceFactory = SequenceFactory.getInstance();
        PSParameter psParameter = new PSParameter();
        psParameter = (PSParameter) identification.getSpectrumMatchParameter(spectrumKey, psParameter);
        psParameter.resetQcResults();

        if (sequenceFactory.concatenatedTargetDecoy()) {

            Integer charge = new Integer(psParameter.getSpecificMapKey());
            String fileName = Spectrum.getSpectrumFile(spectrumKey);
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Examples of eu.isas.peptideshaker.myparameters.PSParameter.resetQcResults()

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            throws SQLException, IOException, ClassNotFoundException, InterruptedException, MzMLUnmarshallerException {

        SequenceFactory sequenceFactory = SequenceFactory.getInstance();
        PSParameter psParameter = new PSParameter();
        psParameter = (PSParameter) peptideAssumption.getUrParam(psParameter);
        psParameter.resetQcResults();

        if (sequenceFactory.concatenatedTargetDecoy()) {

            TargetDecoyMap targetDecoyMap = inputMap.getTargetDecoyMap(peptideAssumption.getAdvocate());
            TargetDecoyResults targetDecoyResults = targetDecoyMap.getTargetDecoyResults();
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