Examples of printGraph()

Examples of att.grappa.Graph.printGraph()

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    out = new File(projectRoot, "test/dotFiles/cfg/last/" + testName);
    testGraph = cfg.getDotGraph();
    outStream = new FileOutputStream(out);

    try {
      testGraph.printGraph(outStream);
      original = new File(projectRoot, "test/dotFiles/cfg/saved/"
          + testName);
      if (!original.exists())
        throw new FileNotFoundException(original.getAbsolutePath());
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Examples of att.grappa.Graph.printGraph()

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      testName = className + "_" + methodName + ".dot";

      out = new File(projectRoot, "test/lastrun/" + testName);
      testGraph = cfg.getDotGraph();
      outStream = new FileOutputStream(out);
      testGraph.printGraph(outStream);

      original = new File(projectRoot, "test/" + testName);
      if (original.exists()) {
        Parser graphParser = new Parser(new FileInputStream(original));
        Graph realGraph;
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Examples of att.grappa.Graph.printGraph()

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    if (store) {
      out = new FileOutputStream("test/" + subFolder + "_" + file);
    } else {
      out = new FileOutputStream("test/lastrun/" + subFolder + "_" + file);
    }
    testGraph.printGraph(out);
    out.close();

    if (doCompare) {
      InputStream original = new FileInputStream("test/" + subFolder
          + "_" + file);
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Examples of org.broadinstitute.gatk.tools.walkers.haplotypecaller.graphs.SeqGraph.printGraph()

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            logger.debug("Resulting haplotype graph does not contain any alternative haplotype path");
        if (debugMode == DebugMode.EXTRA_DEBUG) {
            graphLikelihoodEngine.printGraph(originalActiveRegion.getLocation() + "-" + graphLikelihoodEngine.getKmerSize() + "-haplotypeGraph.dot");
            final SeqGraph sq = graphLikelihoodEngine.haplotypeGraph.convertToSequenceGraph();
            sq.simplifyGraph();
            sq.printGraph(new File(originalActiveRegion.getLocation() + "-" + graphLikelihoodEngine.getKmerSize() + "-haplotypeSeqGraph.dot"), 10000);
            try {
                final FileWriter fw = new FileWriter(new File(originalActiveRegion.getLocation() + "-likelihoods.txt"));
                final PrintWriter pw = new PrintWriter(fw);
                //Note: we only output the first sample likelihoods, perhaps should output all of them but for debugging this is normally what is needed.
                pw.println(result.sampleMatrix(0)); // need to actually implement a proper toString for the SampleMatrix.
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Examples of soot.toolkits.graph.HashMutableDirectedGraph.printGraph()

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            }
          }
        }

        G.v().out.println("VISIBLE ORDER FOR " + tn.name);
        visibleOrder.printGraph();
     
        // Order locks in tn's lockset according to the visible order (insertion sort)
        List<EquivalentValue> newLockset = new ArrayList();
        for(EquivalentValue lockEqVal : tn.lockset)
        {
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