Examples of printByteVector()

Examples of kmer.ProteinKmerBitFeatureVector.printByteVector()

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    testBytes[0] = (byte) 0x1;
   
    vector.parseKmersFromSequence(sequence);
    byte[] bytes = vector.getFeatureVector();

    System.out.println(vector.printByteVector());
    System.out.println(printByteVector(testBytes));
   
    assertTrue(equalBytes(bytes, testBytes));
   
    sequence = "AR";
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Examples of kmer.ProteinKmerBitFeatureVector.printByteVector()

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    vector.parseKmersFromSequence(sequence);
    bytes = vector.getFeatureVector();
   
    testBytes[0] = (byte) 0x2;
   
    System.out.println(vector.printByteVector());
    System.out.println(printByteVector(testBytes));
   
    assertTrue(equalBytes(bytes, testBytes));
   
    sequence = "AV";
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Examples of kmer.ProteinKmerBitFeatureVector.printByteVector()

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    bytes = vector.getFeatureVector();
   
    testBytes[0] = (byte) 0x0;
    testBytes[2] = (byte) 0x8;
   
    System.out.println(vector.printByteVector());
    System.out.println(printByteVector(testBytes));
   
    assertTrue(equalBytes(bytes, testBytes));
   
    sequence = "VV";
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Examples of kmer.ProteinKmerBitFeatureVector.printByteVector()

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    testBytes[0] = (byte) 0x0;
    testBytes[2] = (byte) 0x0;
    testBytes[49] = (byte) 0x80;
   
    System.out.println(vector.printByteVector());
    System.out.println(printByteVector(testBytes));
   
    assertTrue(equalBytes(bytes, testBytes));
   
    // 32, b = -65
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Examples of kmer.ProteinKmerBitFeatureVector.printByteVector()

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      featureVector.parseKmersFromSequence(line.substring(spaceIndex + 1).trim());
     
     
      LOG.info(featureVector.getFeatureVector().length);
      LOG.info(featureVector.printByteVector());
      LOG.info(featureVector.printKmers());
     
      context.write(seqId, new BytesWritable(featureVector.getFeatureVector()));
    }
  }
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Examples of kmer.ProteinKmerCountFeatureVector.printByteVector()

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    testBytes[0] = (byte) 0x1;
   
    vector.parseKmersFromSequence(sequence);
    byte[] bytes = vector.getFeatureVector();

    System.out.println(vector.printByteVector());
    System.out.println(printByteVector(testBytes));
   
    assertTrue(equalBytes(bytes, testBytes));
   
    sequence = "AR";
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Examples of kmer.ProteinKmerCountFeatureVector.printByteVector()

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    bytes = vector.getFeatureVector();
   
    testBytes[0] = (byte) 0x0;
    testBytes[1] = (byte) 0x1;
   
    System.out.println(vector.printByteVector());
    System.out.println(printByteVector(testBytes));
   
    assertTrue(equalBytes(bytes, testBytes));
   
    sequence = "AV";
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Examples of kmer.ProteinKmerCountFeatureVector.printByteVector()

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    bytes = vector.getFeatureVector();
   
    testBytes[1] = (byte) 0x0;
    testBytes[19] = (byte) 0x1;
   
    System.out.println(vector.printByteVector());
    System.out.println(printByteVector(testBytes));
   
    assertTrue(equalBytes(bytes, testBytes));
   
    sequence = "VV";
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Examples of kmer.ProteinKmerCountFeatureVector.printByteVector()

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    bytes = vector.getFeatureVector();
   
    testBytes[19] = (byte) 0x0;
    testBytes[399] = (byte) 0x1;
   
    System.out.println(vector.printByteVector());
    System.out.println(printByteVector(testBytes));
   
    assertTrue(equalBytes(bytes, testBytes));
  }
 
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Examples of kmer.ProteinKmerCountFeatureVector.printByteVector()

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    int item = new Random().nextInt(closestCenters.size());   
    closestCenter = closestCenters.get(item);
   
    if (debug) {
      ProteinKmerCountFeatureVector featureVector = new ProteinKmerCountFeatureVector(value.getBytes() /*vector*/, kmerLength);
      LOG.info("Closest Center: " + closestCenter + ", Distance: " + minDistance + ", FeatureVector: " + featureVector.printByteVector());
    }
   
    if (closestCenter == -1) {
     
    } else {
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