Examples of preformFilters()

Examples of filters.FilterHandler.preformFilters()

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                        counter++;
                        // write to CSV file per protein
                        if (settings.getOutput() != null) {this.writer.writeCSVFile(header, seq);}
                       
                        // filter per protein and show results
                        outputResults(filterHandler.preformFilters(header, seq), counter);
                        seq.delete(0, seq.length());
                    }
                    header = line;
                } else {seq.append(line);}
            }
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Examples of filters.FilterHandler.preformFilters()

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                System.exit(1);}
           
            // process last protein in the given file
            counter++;
            if (settings.getOutput() != null) {this.writer.writeCSVFile(header, seq);}
            outputResults(filterHandler.preformFilters(header, seq), counter);

        } catch (FileNotFoundException ex) {
            System.err.println("The given file is not found");
        } catch (IOException ex) {
            System.err.println("IOException: " + ex.getLocalizedMessage());
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