List of peptideMapChanged() Examples

Examples of peptideMapChanged()

eu.isas.peptideshaker.PeptideShaker.peptideMapChanged()

Processes the identifications if a change occurred in the peptide map. @param identification the identification object containing theidentification matches @param waitingHandler the waiting handler @param processingPreferences the processing preferences @param searchParameters the parameters used for the search @param sequenceMatchingPreferences the sequence matching preferences @throws Exception Exception thrown whenever it is attempted to attachmore than one identification per search engine per spectrum

                PSMaps pSMaps = new PSMaps();
                pSMaps = (PSMaps) peptideShakerGUI.getIdentification().getUrParam(pSMaps);
                PeptideShaker miniShaker = new PeptideShaker(peptideShakerGUI.getExperiment(), peptideShakerGUI.getSample(), peptideShakerGUI.getReplicateNumber(), pSMaps);


                try {
                    miniShaker.peptideMapChanged(peptideShakerGUI.getIdentification(), progressDialog, peptideShakerGUI.getProcessingPreferences(), peptideShakerGUI.getSearchParameters(), peptideShakerGUI.getSequenceMatchingPreferences());
                } catch (Exception e) {
                    JOptionPane.showMessageDialog(peptideShakerGUI, JOptionEditorPane.getJOptionEditorPane(
                            "An identification conflict occured. If you can reproduce the error <br>"
                            + "Please <a href=\"http://code.google.com/p/peptide-shaker/issues/list\">contact the developers</a>."),
                            "Identification Conflict", JOptionPane.ERROR_MESSAGE);

All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.

Examples of peptideMapChanged()

Examples of eu.isas.peptideshaker.PeptideShaker.peptideMapChanged()