Package org.apache.airavata.gfac.context

Examples of org.apache.airavata.gfac.context.MessageContext.addParameter()

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        ((StringParameterType) GC_ProjectName.getType()).setValue("leoshen");
        inMessage.addParameter("GC_ProjectName", GC_ProjectName);

        ActualParameter GC_WorkflowName = new ActualParameter();
        ((StringParameterType) GC_WorkflowName.getType()).setValue("ai__1339258840");
        inMessage.addParameter("GC_WorkflowName", GC_WorkflowName);

        jobExecutionContext.setInMessageContext(inMessage);

        MessageContext outMessage = new MessageContext();
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        jobExecutionContext.setInMessageContext(inMessage);

        MessageContext outMessage = new MessageContext();

        ActualParameter opt_freq_input_gjf = new ActualParameter(URIParameterType.type);
        outMessage.addParameter("opt_freq_input_gjf", opt_freq_input_gjf);

        ActualParameter charmm_miminized_crd = new ActualParameter(URIParameterType.type);
        outMessage.addParameter("charmm_miminized_crd", charmm_miminized_crd);

        ActualParameter step1_log = new ActualParameter(URIParameterType.type);
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        ActualParameter opt_freq_input_gjf = new ActualParameter(URIParameterType.type);
        outMessage.addParameter("opt_freq_input_gjf", opt_freq_input_gjf);

        ActualParameter charmm_miminized_crd = new ActualParameter(URIParameterType.type);
        outMessage.addParameter("charmm_miminized_crd", charmm_miminized_crd);

        ActualParameter step1_log = new ActualParameter(URIParameterType.type);
        outMessage.addParameter("step1_log", step1_log);

        ActualParameter molecule_dir_out_tgz = new ActualParameter(URIParameterType.type);
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        ActualParameter charmm_miminized_crd = new ActualParameter(URIParameterType.type);
        outMessage.addParameter("charmm_miminized_crd", charmm_miminized_crd);

        ActualParameter step1_log = new ActualParameter(URIParameterType.type);
        outMessage.addParameter("step1_log", step1_log);

        ActualParameter molecule_dir_out_tgz = new ActualParameter(URIParameterType.type);
        outMessage.addParameter("molecule_dir_out_tgz", molecule_dir_out_tgz);

        ActualParameter gcvars = new ActualParameter(URIParameterType.type);
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        ActualParameter step1_log = new ActualParameter(URIParameterType.type);
        outMessage.addParameter("step1_log", step1_log);

        ActualParameter molecule_dir_out_tgz = new ActualParameter(URIParameterType.type);
        outMessage.addParameter("molecule_dir_out_tgz", molecule_dir_out_tgz);

        ActualParameter gcvars = new ActualParameter(URIParameterType.type);
        outMessage.addParameter("gcvars", gcvars);

        jobExecutionContext.setOutMessageContext(outMessage);
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        ActualParameter molecule_dir_out_tgz = new ActualParameter(URIParameterType.type);
        outMessage.addParameter("molecule_dir_out_tgz", molecule_dir_out_tgz);

        ActualParameter gcvars = new ActualParameter(URIParameterType.type);
        outMessage.addParameter("gcvars", gcvars);

        jobExecutionContext.setOutMessageContext(outMessage);

    }
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            } else if ("StdOut".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(StdOutParameterType.type);
            } else if ("StdErr".equals(parameter.getParameterType().getName())) {
                actualParameter.getType().changeType(StdErrParameterType.type);
            }
            outContext.addParameter(parameter.getParameterName(), actualParameter);
        }
        return outContext;
    }
}
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        jobExecutionContext.addSecurityContext(AmazonSecurityContext.AMAZON_SECURITY_CONTEXT, amazonSecurityContext);

        MessageContext inMessage = new MessageContext();
        ActualParameter genomeInput1 = new ActualParameter();
        ((StringParameterType)genomeInput1.getType()).setValue(sequence1);
        inMessage.addParameter("genome_input1", genomeInput1);

        ActualParameter genomeInput2 = new ActualParameter();
        ((StringParameterType)genomeInput2.getType()).setValue(sequence2);
        inMessage.addParameter("genome_input2", genomeInput2);
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        ((StringParameterType)genomeInput1.getType()).setValue(sequence1);
        inMessage.addParameter("genome_input1", genomeInput1);

        ActualParameter genomeInput2 = new ActualParameter();
        ((StringParameterType)genomeInput2.getType()).setValue(sequence2);
        inMessage.addParameter("genome_input2", genomeInput2);

        MessageContext outMessage = new MessageContext();
        ActualParameter echo_out = new ActualParameter();
        outMessage.addParameter("distance", echo_out);
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        ((StringParameterType)genomeInput2.getType()).setValue(sequence2);
        inMessage.addParameter("genome_input2", genomeInput2);

        MessageContext outMessage = new MessageContext();
        ActualParameter echo_out = new ActualParameter();
        outMessage.addParameter("distance", echo_out);

        jobExecutionContext.setInMessageContext(inMessage);
        jobExecutionContext.setOutMessageContext(outMessage);
    }
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