Examples of noValidated()

Examples of eu.isas.peptideshaker.scoring.targetdecoy.TargetDecoyResults.noValidated()

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                psmThreshold = targetDecoyResults.getScoreLimit();
                confidenceThreshold = targetDecoyResults.getConfidenceLimit() + targetDecoyMap.getResolution();
                if (confidenceThreshold > 100) {
                    confidenceThreshold = 100;
                }
                noValidated = targetDecoyResults.noValidated();
            }

            if (!noValidated && psParameter.getPsmProbabilityScore() <= psmThreshold) {

                String spectrumFile = Spectrum.getSpectrumFile(spectrumKey);
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Examples of eu.isas.peptideshaker.scoring.targetdecoy.TargetDecoyResults.noValidated()

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            if (confidenceThreshold > 100) {
                confidenceThreshold = 100;
            }

            boolean noValidated = targetDecoyResults.noValidated();

            if (!noValidated && tagAssumption.getScore() <= seThreshold) { //@TODO: include ascending/descending scores

                String reasonDoubtful = null;
                boolean filterPassed = true;
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Examples of eu.isas.peptideshaker.scoring.targetdecoy.TargetDecoyResults.noValidated()

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            if (confidenceThreshold > 100) {
                confidenceThreshold = 100;
            }

            boolean noValidated = targetDecoyResults.noValidated();

            if (!noValidated && peptideAssumption.getScore() <= seThreshold) { //@TODO: include ascending/descending scores

                String reasonDoubtful = null;
                boolean filterPassed = true;
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