else {
builder.filters(filterStrings);
}
// Apply filters to the necessary genotypes
builder.noGenotypes();
final List<Genotype> newGenotypes = new ArrayList<Genotype>(ctx.getNSamples());
for (final Genotype gt : ctx.getGenotypes()) {
final GenotypeBuilder gtBuilder = new GenotypeBuilder(gt);
final List<String> filters = gtFilterStrings.get(gt.getSampleName());