List<File> srcs = FileUtil.applyCwd(cwd, sourceFolders);
List<String> expandedModules = ModuleWildcardsHelper.expandWildcards(srcs , moduleSpecs);
final List<ModuleSpec> modules = ModuleSpec.parseEachList(expandedModules);
// we need to plug in the module manager which can load from .cars
builder.moduleManagerFactory(new ModuleManagerFactory(){
@Override
public ModuleManager createModuleManager(Context context) {
return new CeylonDocModuleManager(CeylonDocTool.this, context, modules, outputRepositoryManager, log);
}
});