Package loci.common

Examples of loci.common.RandomAccessInputStream.readInt()

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      addSeriesMeta("DimensionX", ras.readInt());
      addSeriesMeta("DimensionY", ras.readInt());

      ras.seek(32);
      addSeriesMeta("ThumbnailX", ras.readInt());
      addSeriesMeta("ThumbnailY", ras.readInt());

      // pixel sizes are stored in meters, we need them in microns
      pixelSizeX = ras.readDouble() * 1000000;
      pixelSizeY = ras.readDouble() * 1000000;
      pixelSizeZ = ras.readDouble() * 1000000;
 
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      if (spectralScan != 1) {
        addSeriesMeta("SpectralScan", "no spectral scan");
      }
      else addSeriesMeta("SpectralScan", "acquired with spectral scan");

      int type = ras.readInt();
      switch (type) {
        case 1:
          addSeriesMeta("DataType2", "calculated data");
          break;
        case 2:
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      long[] overlayOffsets = new long[9];
      String[] overlayKeys = new String[] {"VectorOverlay", "InputLut",
        "OutputLut", "ROI", "BleachROI", "MeanOfRoisOverlay",
        "TopoIsolineOverlay", "TopoProfileOverlay", "LinescanOverlay"};

      overlayOffsets[0] = ras.readInt();
      overlayOffsets[1] = ras.readInt();
      overlayOffsets[2] = ras.readInt();

      channelColorsOffset = ras.readInt();
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      String[] overlayKeys = new String[] {"VectorOverlay", "InputLut",
        "OutputLut", "ROI", "BleachROI", "MeanOfRoisOverlay",
        "TopoIsolineOverlay", "TopoProfileOverlay", "LinescanOverlay"};

      overlayOffsets[0] = ras.readInt();
      overlayOffsets[1] = ras.readInt();
      overlayOffsets[2] = ras.readInt();

      channelColorsOffset = ras.readInt();

      addSeriesMeta("TimeInterval", ras.readDouble());
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        "OutputLut", "ROI", "BleachROI", "MeanOfRoisOverlay",
        "TopoIsolineOverlay", "TopoProfileOverlay", "LinescanOverlay"};

      overlayOffsets[0] = ras.readInt();
      overlayOffsets[1] = ras.readInt();
      overlayOffsets[2] = ras.readInt();

      channelColorsOffset = ras.readInt();

      addSeriesMeta("TimeInterval", ras.readDouble());
      ras.skipBytes(4);
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      overlayOffsets[0] = ras.readInt();
      overlayOffsets[1] = ras.readInt();
      overlayOffsets[2] = ras.readInt();

      channelColorsOffset = ras.readInt();

      addSeriesMeta("TimeInterval", ras.readDouble());
      ras.skipBytes(4);
      scanInformationOffset = ras.readInt();
      applicationTagOffset = ras.readInt();
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      channelColorsOffset = ras.readInt();

      addSeriesMeta("TimeInterval", ras.readDouble());
      ras.skipBytes(4);
      scanInformationOffset = ras.readInt();
      applicationTagOffset = ras.readInt();
      timeStampOffset = ras.readInt();
      eventListOffset = ras.readInt();
      overlayOffsets[3] = ras.readInt();
      overlayOffsets[4] = ras.readInt();
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      channelColorsOffset = ras.readInt();

      addSeriesMeta("TimeInterval", ras.readDouble());
      ras.skipBytes(4);
      scanInformationOffset = ras.readInt();
      applicationTagOffset = ras.readInt();
      timeStampOffset = ras.readInt();
      eventListOffset = ras.readInt();
      overlayOffsets[3] = ras.readInt();
      overlayOffsets[4] = ras.readInt();
      ras.skipBytes(4);
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      addSeriesMeta("TimeInterval", ras.readDouble());
      ras.skipBytes(4);
      scanInformationOffset = ras.readInt();
      applicationTagOffset = ras.readInt();
      timeStampOffset = ras.readInt();
      eventListOffset = ras.readInt();
      overlayOffsets[3] = ras.readInt();
      overlayOffsets[4] = ras.readInt();
      ras.skipBytes(4);
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      addSeriesMeta("TimeInterval", ras.readDouble());
      ras.skipBytes(4);
      scanInformationOffset = ras.readInt();
      applicationTagOffset = ras.readInt();
      timeStampOffset = ras.readInt();
      eventListOffset = ras.readInt();
      overlayOffsets[3] = ras.readInt();
      overlayOffsets[4] = ras.readInt();
      ras.skipBytes(4);

      addSeriesMeta("DisplayAspectX", ras.readDouble());
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