List of loadOntologyFromOntologyDocument() Examples

Examples of loadOntologyFromOntologyDocument()

org.semanticweb.owlapi.model.OWLOntologyManager.loadOntologyFromOntologyDocument()
Loads an ontology from an ontology document specified by an IRI. In contrast the the {@link #loadOntology(IRI)} method, no mapping isperformed on the specified IRI. @param documentIRI The ontology document IRI where the ontology will be loaded from. @return The ontology that was loaded. @throws OWLOntologyCreationException If there was a problem in creating and loading the ontology. @throws org.semanticweb.owlapi.io.UnparsableOntologyException if the ontology was being parsed from a document and the document contained syntax errors. @throws UnloadableImportException if the ontology imports ontologies and one of the imports could not be loaded for what ever reason. If the {@link MissingImportHandlingStrategy} is set to{@link MissingImportHandlingStrategy#SILENT} then this exceptionwill not be thrown. The {@code UnloadableImportException}contains information about the import declaration that triggered the import and the cause of this exception is an {@code OWLOntologyCreationException} which contains informationabout why the import could not be loaded. @throws org.semanticweb.owlapi.io.OWLOntologyCreationIOException if there was an {@code IOException} when trying to load theontology. @throws OWLOntologyDocumentAlreadyExistsException if the specified {@code documentIRI} is already the document IRIfor a loaded ontology. @throws OWLOntologyAlreadyExistsException if the manager already contains an ontology whose ontology IRI and version IRI is the same as the ontology IRI and version IRI of the ontology contained in the document pointed to by {@code documentIRI}.

Examples of org.semanticweb.owlapi.model.OWLOntologyManager.loadOntologyFromOntologyDocument()

        ont2.getOWLOntologyManager().saveOntology(ont2, format, writer2);
        OWLOntologyManager man = OWLManager.createOWLOntologyManager();
        @SuppressWarnings("unused")
        OWLOntology ont1L = man
                .loadOntologyFromOntologyDocument(savedLocation1);
        OWLOntology ont2L = man
                .loadOntologyFromOntologyDocument(savedLocation2);
        for (OWLOntology importedOntology : ont2L.getImports()) {
            for (OWLAxiom importedAxiom : importedOntology.getAxioms()) {
                assert importedAxiom != null;
                assertTrue(containsConsiderEx(importedOntology, importedAxiom));

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Examples of org.semanticweb.owlapi.model.OWLOntologyManager.loadOntologyFromOntologyDocument()

    public static void main(String[] args) {
        try {
            // Load an example ontology. In this case, we'll just load the pizza
            // ontology.
            OWLOntologyManager manager = OWLManager.createOWLOntologyManager();
            OWLOntology ontology = manager
                    .loadOntologyFromOntologyDocument(new StringDocumentSource(
                            KOALA));
            System.out.println("Loaded ontology: " + ontology.getOntologyID());
            // We need a reasoner to do our query answering
            OWLReasoner reasoner = createReasoner(ontology);

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Examples of org.semanticweb.owlapi.model.OWLOntologyManager.loadOntologyFromOntologyDocument()

    protected OWLOntology loadOntologyWithConfig(
            @Nonnull StringDocumentTarget o,
            @Nonnull OWLOntologyLoaderConfiguration c)
            throws OWLOntologyCreationException {
        OWLOntologyManager manager = OWLManager.createOWLOntologyManager();
        return manager.loadOntologyFromOntologyDocument(
                new StringDocumentSource(o), c);
    }


    @Nonnull
    protected StringDocumentTarget saveOntology(@Nonnull OWLOntology o)

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Examples of org.semanticweb.owlapi.model.OWLOntologyManager.loadOntologyFromOntologyDocument()

    @Test
    public void shouldNotLoadWrong() throws OWLOntologyCreationException {
        OWLOntologyManager m = OWLManager.createOWLOntologyManager();
        m.createOntology(IRI.create("urn:test"));
        StringDocumentSource documentSource = new StringDocumentSource(input);
        OWLOntology o = m.loadOntologyFromOntologyDocument(documentSource);
        assertTrue(o.getOntologyID().toString(), o.isAnonymous());
        assertFalse(o.getOntologyID().getDefaultDocumentIRI().isPresent());
    }
}

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Examples of org.semanticweb.owlapi.model.OWLOntologyManager.loadOntologyFromOntologyDocument()

        // Now ask the manager to load the ontology
        // OWLOntology ontology = manager
        // .loadOntologyFromOntologyDocument(documentIRI);
        // but in this test we don't rely on a remote ontology and load it from
        // a string
        OWLOntology ontology = manager
                .loadOntologyFromOntologyDocument(new StringDocumentSource(
                        KOALA));
        // Print out all of the classes which are contained in the signature of
        // the ontology. These are the classes that are referenced by axioms in
        // the ontology.

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Examples of org.semanticweb.owlapi.model.OWLOntologyManager.loadOntologyFromOntologyDocument()

        @SuppressWarnings("null")
        OWLOntologyDocumentSource source = new StreamDocumentSource(getClass()
                .getResourceAsStream("/celltype.obo"),
                OWLOntologyDocumentSourceBase.getNextDocumentIRI("obo"),
                new OBO12DocumentFormat(), null);
        m.loadOntologyFromOntologyDocument(source);
    }


    @Test
    public void shouldParseOBO12() throws OWLOntologyCreationException {
        OWLOntologyManager m = OWLManager.createOWLOntologyManager();

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Examples of org.semanticweb.owlapi.model.OWLOntologyManager.loadOntologyFromOntologyDocument()

        @SuppressWarnings("null")
        OWLOntologyDocumentSource source = new StreamDocumentSource(getClass()
                .getResourceAsStream("/behavior.obo"),
                OWLOntologyDocumentSourceBase.getNextDocumentIRI("obo"),
                new OBO12DocumentFormat(), null);
        m.loadOntologyFromOntologyDocument(source);
    }


    @SuppressWarnings("null")
    @Test
    public void shouldParseGenericOBO() throws OWLOntologyCreationException {

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Examples of org.semanticweb.owlapi.model.OWLOntologyManager.loadOntologyFromOntologyDocument()

    public void shouldParseGenericOBO() throws OWLOntologyCreationException {
        OWLOntologyManager m = OWLManager.createOWLOntologyManager();
        assertEquals(19, m.getOntologyParsers().size());
        OWLOntologyDocumentSource source = new StreamDocumentSource(getClass()
                .getResourceAsStream("/behavior.obo"));
        m.loadOntologyFromOntologyDocument(source);
    }
}

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Examples of org.semanticweb.owlapi.model.OWLOntologyManager.loadOntologyFromOntologyDocument()

                + "created_by: george gkoutos";
        StringDocumentSource streamDocumentSource = new StringDocumentSource(
                input);
        OWLOntologyLoaderConfiguration loaderConfig = new OWLOntologyLoaderConfiguration()
                .setMissingImportHandlingStrategy(MissingImportHandlingStrategy.SILENT);
        OWLOntology ontology = rootOntologyManager
                .loadOntologyFromOntologyDocument(streamDocumentSource,
                        loaderConfig);
        OWLAnnotationProperty date = AnnotationProperty(IRI("http://www.geneontology.org/formats/oboInOwl#date"));
        OWLAnnotationProperty mpathSlim = AnnotationProperty(IRI("http://purl.obolibrary.org/obo/uo#mpath_slim"));
        OWLAnnotationProperty subsetProperty = AnnotationProperty(IRI("http://www.geneontology.org/formats/oboInOwl#SubsetProperty"));

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Examples of org.semanticweb.owlapi.model.OWLOntologyManager.loadOntologyFromOntologyDocument()

        // storerRegistry, parserRegistry);
        OWLOntologyManager testManager = OWLManager.createOWLOntologyManager();
        testManager.getOntologyStorers().set(new RioNTriplesStorerFactory(),
                new RioRDFXMLStorerFactory(), new RioTurtleStorerFactory());
        testOntologyEmpty = testManager.createOntology(testOntologyUri1);
        testOntologyKoala = testManager
                .loadOntologyFromOntologyDocument(getClass()
                        .getResourceAsStream("/koala.owl"));
        assertEquals(70, testOntologyKoala.getAxiomCount());
        testHandlerStatementCollector = new StatementCollector();
        testOntologyEmptyStatement = vf

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