Examples of loadMotifCollection()

Examples of ru.autosome.commons.importer.PWMImporter.loadMotifCollection()

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    return from_arglist(argv);
  }

  protected List<PWM> loadMotifCollection() {
    PWMImporter importer = new PWMImporter(collectionBackground, dataModel, effectiveCount, collectionTranspose);
    return importer.loadMotifCollection(pathToCollectionOfPWMs);
  }

  protected PWM loadQueryMotif() {
    PWMImporter importer = new PWMImporter(queryBackground, dataModel, effectiveCount, queryTranspose);
    return importer.loadMotif(queryPMFilename);
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Examples of ru.autosome.commons.importer.PWMImporter.loadMotifCollection()

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  }

  @Override
  protected List<PWM> loadMotifCollection(File path_to_collection) {
    PWMImporter importer = new PWMImporter(background, dataModel, effectiveCount, transpose);
    return importer.loadMotifCollection(path_to_collection);
  }

  @Override
  protected CompareModelsCountsGiven calculator(PWM firstModel, PWM secondModel) {
    return new CompareModelsCountsGiven(firstModel, secondModel,
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