Examples of javax.vecmath.Matrix3f.transform()

javax.vecmath.Matrix3f.transform()

      case Token.matrix3f:
        if (pt != null) {
          // pt * m
          Matrix3f m3b = new Matrix3f((Matrix3f) x2.value);
          m3b.transpose();
          m3b.transform(pt);
          if (x1.tok == Token.varray)
            return addX(ScriptVariable.getVariable(new float[] { pt.x, pt.y,
                pt.z }));
          return addX(pt);
        }

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      default:
        return addX(ScriptVariable.fValue(x1) * ScriptVariable.fValue(x2));
      case Token.matrix3f:
        Matrix3f m3 = (Matrix3f) x1.value;
        if (pt != null) {
          m3.transform(pt);
          if (x2.tok == Token.varray)
            return addX(ScriptVariable.getVariable(new float[] { pt.x, pt.y,
                pt.z }));
          return addX(pt);
        }

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      getNHPoint(ptTemp, vC, true, false);
      vB.sub(ptCa, getNitrogenAtom());
      vB.cross(vC, vB);
      Matrix3f mat = new Matrix3f();
      mat.set(new AxisAngle4f(vB, -beta));
      mat.transform(vC);
      vA.cross(vB, vC);
      break;
    case 'b': // backbone
      return super.getQuaternion('b');
    case 'c':

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          AxisAngle4f a = new AxisAngle4f(z.x, z.y, z.z,
              (pt == 2 ? 1 : -1) * 2.09439507f); // PI*2/3
          Matrix3f m = new Matrix3f();
          m.setIdentity();
          m.set(a);
          m.transform(x);
        }
        z.set(x);
        x.cross(vTemp, z);
        break;
      }

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      vTemp2.sub(vertices[0]);
      vTemp2.cross(vTemp, vTemp2);
      vTemp2.cross(vTemp2, vTemp);
      vTemp2.normalize();
      vTemp2.scale(dmesh.scale / 2);
      mat.transform(vTemp2);
      //control points
      float degrees = theta / 5;
      while (Math.abs(degrees) > 5)
        degrees /= 2;
      nPoints = (int) (theta / degrees + 0.5f) + 1;

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          vpt0.set(vpt1);
        vpt1.scaleAdd(1, vTemp2, pt1f);
        if (i == 0)
          vpt2.set(vpt1);
        viewer.transformPoint(vpt1, screens[i]);
        mat.transform(vTemp2);
      }
      if (dmesh.isVector && !dmesh.nohead) {
        renderArrowHead(vpt0, vpt1, 0.3f, false, false);
        viewer.transformPoint(pt1f, screens[nPoints - 1]);
      }

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        a.set(y, rotRadians);
      else
        a.set(z, rotRadians);
      Matrix3f m = new Matrix3f();
      m.set(a);
      m.transform(x);
      m.transform(y);
      m.transform(z);
    }
    if (thisMesh == null && nLCAO == 0)
      nLCAO = meshCount;

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      else
        a.set(z, rotRadians);
      Matrix3f m = new Matrix3f();
      m.set(a);
      m.transform(x);
      m.transform(y);
      m.transform(z);
    }
    if (thisMesh == null && nLCAO == 0)
      nLCAO = meshCount;
    String id = (thisMesh == null ? (nElectrons > 0 ? "lp" : "lcao") + (++nLCAO) + "_" + lcaoCartoon

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        a.set(z, rotRadians);
      Matrix3f m = new Matrix3f();
      m.set(a);
      m.transform(x);
      m.transform(y);
      m.transform(z);
    }
    if (thisMesh == null && nLCAO == 0)
      nLCAO = meshCount;
    String id = (thisMesh == null ? (nElectrons > 0 ? "lp" : "lcao") + (++nLCAO) + "_" + lcaoCartoon
        : thisMesh.thisID);

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          Vector3f w = Stack.alloc(Vector3f.class);
          w.set(b[m[0] > m[1] ? m[0] > m[2] ? 0 : 2 : m[1] > m[2] ? 1 : 2]);


          tmp.normalize(w);
          Support(tmp, simplex[4]); r.transform(w);
          tmp.normalize(w);
          Support(tmp, simplex[2]); r.transform(w);
          tmp.normalize(w);
          Support(tmp, simplex[3]); r.transform(w);
          order = 4;

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