Package jargs.gnu

Examples of jargs.gnu.CmdLineParser.addBooleanOption()

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        public static CmdLineParser buildParser() {
            CmdLineParser parser = new CmdLineParser();

            HELP_ARG = parser.addBooleanOption(HELP);
            SIGN_ARG = parser.addBooleanOption(SIGN);
            VALIDATE_ARG = parser.addBooleanOption(VALIDATE);
            INPUT_FILE_ARG = parser.addStringOption(INPUT_FILE);
            KEYSTORE_ARG = parser.addStringOption(KEYSTORE);
            KEYSTORE_TYPE_ARG = parser.addStringOption(KEYSTORE_TYPE);
            KEYSTORE_PASS_ARG = parser.addStringOption(KEYSTORE_PASS);
            ALIAS_ARG = parser.addStringOption(ALIAS);
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    }

    public static void main(String[] args) {
  // First parse the command line arguments
  CmdLineParser parser = new CmdLineParser();                            
        CmdLineParser.Option help = parser.addBooleanOption('h', "help");
        CmdLineParser.Option round = parser.addBooleanOption('r', "roundtrip");       
  CmdLineParser.Option out = parser.addStringOption('o', "outfile");
  CmdLineParser.Option based = parser.addStringOption('b', "basedir");
  try {
      parser.parse(args);
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    public static void main(String[] args) {
  // First parse the command line arguments
  CmdLineParser parser = new CmdLineParser();                            
        CmdLineParser.Option help = parser.addBooleanOption('h', "help");
        CmdLineParser.Option round = parser.addBooleanOption('r', "roundtrip");       
  CmdLineParser.Option out = parser.addStringOption('o', "outfile");
  CmdLineParser.Option based = parser.addStringOption('b', "basedir");
  try {
      parser.parse(args);
  }
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                extFactorOption = parser.addIntegerOption('e', "extFactor");
                preExtFactorOption = parser.addIntegerOption("preExtFactor");
                postExtFactorOption = parser.addIntegerOption("postExtFactor");
                windowSizeOption = parser.addIntegerOption('w', "windowSize");

                separateBasesOption = parser.addBooleanOption("bases");
                strandOption = parser.addStringOption("strands");
                queryStringOpt = parser.addStringOption("query");
                minMapQualityOpt = parser.addIntegerOption("minMapQuality");
                includeDupsOpt = parser.addBooleanOption("includeDuplicates");
                pairedCoverageOpt = parser.addBooleanOption("pairs");
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                separateBasesOption = parser.addBooleanOption("bases");
                strandOption = parser.addStringOption("strands");
                queryStringOpt = parser.addStringOption("query");
                minMapQualityOpt = parser.addIntegerOption("minMapQuality");
                includeDupsOpt = parser.addBooleanOption("includeDuplicates");
                pairedCoverageOpt = parser.addBooleanOption("pairs");

                // Trackline
                colorOption = parser.addStringOption("color");
            } else {
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                separateBasesOption = parser.addBooleanOption("bases");
                strandOption = parser.addStringOption("strands");
                queryStringOpt = parser.addStringOption("query");
                minMapQualityOpt = parser.addIntegerOption("minMapQuality");
                includeDupsOpt = parser.addBooleanOption("includeDuplicates");
                pairedCoverageOpt = parser.addBooleanOption("pairs");

                // Trackline
                colorOption = parser.addStringOption("color");
            } else {
                // options for gct files
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    private static boolean parseArgs(String[] args) {
        CmdLineParser parser = new CmdLineParser();

        CmdLineParser.Option projectFileOpt = parser.addStringOption('p', "projectFile");
        CmdLineParser.Option homeDirOpt = parser.addStringOption('d', "homeDir");
        CmdLineParser.Option verboseOpt = parser.addBooleanOption('v', "verbose");
        CmdLineParser.Option helpOpt = parser.addBooleanOption('h', "help");       
        CmdLineParser.Option debugSuffixOpt = parser.addStringOption('s', "debugSuffix");
              
        CmdLineParser.Option sourceDirOpt = parser.addStringOption('f', "sourceDir");
        CmdLineParser.Option deployDirOpt = parser.addStringOption('n', "deployDir");
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        CmdLineParser parser = new CmdLineParser();

        CmdLineParser.Option projectFileOpt = parser.addStringOption('p', "projectFile");
        CmdLineParser.Option homeDirOpt = parser.addStringOption('d', "homeDir");
        CmdLineParser.Option verboseOpt = parser.addBooleanOption('v', "verbose");
        CmdLineParser.Option helpOpt = parser.addBooleanOption('h', "help");       
        CmdLineParser.Option debugSuffixOpt = parser.addStringOption('s', "debugSuffix");
              
        CmdLineParser.Option sourceDirOpt = parser.addStringOption('f', "sourceDir");
        CmdLineParser.Option deployDirOpt = parser.addStringOption('n', "deployDir");
        CmdLineParser.Option forceEncodingOpt = parser.addStringOption('e', "forceEncoding");
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        CmdLineParser.Option sourceDirOpt = parser.addStringOption('f', "sourceDir");
        CmdLineParser.Option deployDirOpt = parser.addStringOption('n', "deployDir");
        CmdLineParser.Option forceEncodingOpt = parser.addStringOption('e', "forceEncoding");
        CmdLineParser.Option forceLineEndOpt = parser.addStringOption('l', "forceLineEnd");
        CmdLineParser.Option stripCommentsOpt = parser.addBooleanOption('c', "stripComments");
        CmdLineParser.Option removeTempPkgOpt = parser.addBooleanOption('t', "removeTempPkg");
        CmdLineParser.Option removeFilterOpt = parser.addStringOption('F', "removeFilter");
        CmdLineParser.Option deployModeOpt = parser.addBooleanOption('D', "deployMode");
              
        CmdLineParser.Option yuiLineBreakOpt = parser.addIntegerOption('L', "yui-line-break");
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        CmdLineParser.Option sourceDirOpt = parser.addStringOption('f', "sourceDir");
        CmdLineParser.Option deployDirOpt = parser.addStringOption('n', "deployDir");
        CmdLineParser.Option forceEncodingOpt = parser.addStringOption('e', "forceEncoding");
        CmdLineParser.Option forceLineEndOpt = parser.addStringOption('l', "forceLineEnd");
        CmdLineParser.Option stripCommentsOpt = parser.addBooleanOption('c', "stripComments");
        CmdLineParser.Option removeTempPkgOpt = parser.addBooleanOption('t', "removeTempPkg");
        CmdLineParser.Option removeFilterOpt = parser.addStringOption('F', "removeFilter");
        CmdLineParser.Option deployModeOpt = parser.addBooleanOption('D', "deployMode");
              
        CmdLineParser.Option yuiLineBreakOpt = parser.addIntegerOption('L', "yui-line-break");
        CmdLineParser.Option yuiVerboseOpt = parser.addBooleanOption('V', "yui-verbose");
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