Examples of initEmptyPartitions()

Examples of uk.ac.bbsrc.tgac.miso.core.data.impl.SequencerPartitionContainerImpl.initEmptyPartitions()

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                        }
                        else {
                          f.setPlatformType(PlatformType.LS454);
                        }
                        f.setPartitionLimit(numPartitions);
                        f.initEmptyPartitions();
                        f.setIdentificationBarcode(ptpId);

                        log.debug("\\_ Created new SequencerPartitionContainer with "+f.getPartitions().size()+" partitions");
                        ((RunImpl)r).addSequencerPartitionContainer(f);
                      }
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Examples of uk.ac.bbsrc.tgac.miso.core.data.impl.SequencerPartitionContainerImpl.initEmptyPartitions()

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                    if (r.getSequencerReference().getPlatform().getInstrumentModel().contains("MiSeq")) {
                      f.setPartitionLimit(1);
                    }
                  }

                  f.initEmptyPartitions();
                  f.setIdentificationBarcode(run.getString("containerId"));
                  ((RunImpl)r).addSequencerPartitionContainer(f);
                }
              }
            }
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Examples of uk.ac.bbsrc.tgac.miso.core.data.impl.SequencerPartitionContainerImpl.initEmptyPartitions()

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                else {
                  if (r.getSequencerReference().getPlatform().getInstrumentModel().contains("MiSeq")) {
                    f.setPartitionLimit(1);
                  }
                }
                f.initEmptyPartitions();
              }
              else {
                //log.info("Got "+f.getPartitions().size()+" partitions for run " + r.getName() + " (container "+f.getContainerId()+")");
                if (r.getSequencerReference().getPlatform().getInstrumentModel().contains("MiSeq")) {
                  if (f.getPartitions().size() != 1) {
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Examples of uk.ac.bbsrc.tgac.miso.core.data.impl.SequencerPartitionContainerImpl.initEmptyPartitions()

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                    else {
                      if (run.has("cells")) {
                        JSONArray cells = run.getJSONArray("cells");
                        SequencerPartitionContainer f = new SequencerPartitionContainerImpl();
                        f.setPartitionLimit(cells.size());
                        f.initEmptyPartitions();
                        if (run.has("plateId") && !"".equals(run.getString("plateId"))) {
                          f.setIdentificationBarcode(run.getString("plateId"));
                        }
                        if (f.getPlatformType() == null && r.getPlatformType() != null) {
                          f.setPlatformType(r.getPlatformType());
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Examples of uk.ac.bbsrc.tgac.miso.core.data.impl.SequencerPartitionContainerImpl.initEmptyPartitions()

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                  }
                  else {
                    log.debug("No containers linked to run " + r.getId() + ": creating...");
                    SequencerPartitionContainer f = new SequencerPartitionContainerImpl();
                    f.setSecurityProfile(r.getSecurityProfile());
                    f.initEmptyPartitions();
                    f.setIdentificationBarcode(run.getString("containerNum"));
                    if (f.getPlatformType() == null && r.getPlatformType() != null) {
                      f.setPlatformType(r.getPlatformType());
                    }
                    else {
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