Examples of initDefaults()


Examples of org.sbml.jsbml.Compartment.initDefaults()

  @SuppressWarnings("deprecation")
@Test public void test_Compartment_initDefaults()
  {
    Compartment c = new  Compartment(2,4);
    c.setId( "A");
    c.initDefaults();
    assertTrue(c.getId().equals( "A"));
    assertTrue( c.getName().equals("") == true );
    assertTrue( c.getUnits().equals("") == true );
    assertTrue( c.getOutside().equals("") == true );
    assertTrue( c.getSpatialDimensions() == 3d );
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Examples of org.sbml.jsbml.Compartment.initDefaults()

              return unitDefinition;
            } else if (elementName.equals("compartment")
                && list.getSBaseListType().equals(
                    ListOf.Type.listOfCompartments)) {
              Compartment compartment = (Compartment) newContextObject;
              compartment.initDefaults();
              model.addCompartment(compartment);

              return compartment;
            } else if (elementName.equals("species")
                && list.getSBaseListType().equals(
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Examples of org.sbml.jsbml.Compartment.initDefaults()

              return unitDefinition;
            } else if (elementName.equals("compartment")
                && list.getSBaseListType().equals(
                    ListOf.Type.listOfCompartments)) {
              Compartment compartment = (Compartment) newContextObject;
              compartment.initDefaults();
              model.addCompartment(compartment);

              return compartment;
            } else if (elementName.equals("species")
                && list.getSBaseListType().equals(
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Examples of org.sbml.jsbml.Event.initDefaults()

                && list.getSBaseListType().equals(
                    ListOf.Type.listOfEvents)
                && model.getLevel() > 1) {
              Event event = (Event) newContextObject;
              model.addEvent(event);
              event.initDefaults();

              return event;
            } else if (elementName.equals("compartmentType")
                && list.getSBaseListType().equals(
                    ListOf.Type.listOfCompartmentTypes)
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Examples of org.sbml.jsbml.Event.initDefaults()

                && list.getSBaseListType().equals(
                    ListOf.Type.listOfEvents)
                && model.getLevel() > 1) {
              Event event = (Event) newContextObject;
              model.addEvent(event);
              event.initDefaults();

              return event;
            } else if (elementName.equals("compartmentType")
                && list.getSBaseListType().equals(
                    ListOf.Type.listOfCompartmentTypes)
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Examples of org.sbml.jsbml.Event.initDefaults()

                && list.getSBaseListType().equals(
                    ListOf.Type.listOfEvents)
                && model.getLevel() > 1) {
              Event event = (Event) newContextObject;
              model.addEvent(event);
              event.initDefaults();

              return event;
            } else if (elementName.equals("compartmentType")
                && list.getSBaseListType().equals(
                    ListOf.Type.listOfCompartmentTypes)
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Examples of org.sbml.jsbml.Model.initDefaults()

          SBMLDocument sbmlDocument = (SBMLDocument) contextObject;
          if (elementName.equals("model")) {
            Model model = (Model) newContextObject;
            model.setLevel(sbmlDocument.getLevel());
            model.setVersion(sbmlDocument.getVersion());
            model.initDefaults();
            sbmlDocument.setModel(model);

            return model;
          }
        } else if (contextObject instanceof Model) {
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Examples of org.sbml.jsbml.Model.initDefaults()

          SBMLDocument sbmlDocument = (SBMLDocument) contextObject;
          if (elementName.equals("model")) {
            Model model = (Model) newContextObject;
            model.setLevel(sbmlDocument.getLevel());
            model.setVersion(sbmlDocument.getVersion());
            model.initDefaults();
            sbmlDocument.setModel(model);

            return model;
          }
        } else if (contextObject instanceof Model) {
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Examples of org.sbml.jsbml.Model.initDefaults()

          SBMLDocument sbmlDocument = (SBMLDocument) contextObject;
          if (elementName.equals("model")) {
            Model model = (Model) newContextObject;
            model.setLevel(sbmlDocument.getLevel());
            model.setVersion(sbmlDocument.getVersion());
            model.initDefaults();
            model.setParentSBML(sbmlDocument);
            sbmlDocument.setModel(model);

            return model;
          }
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Examples of org.sbml.jsbml.Parameter.initDefaults()

              return species;
            } else if (elementName.equals("parameter")
                && list.getSBaseListType().equals(
                    ListOf.Type.listOfParameters)) {
              Parameter parameter = (Parameter) newContextObject;
              parameter.initDefaults();
              model.addParameter(parameter);

              return parameter;
            } else if (elementName.equals("initialAssignment")
                && list.getSBaseListType().equals(
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