Examples of designTSSPair()

Examples of org.moltools.apps.probemaker.design.DefaultTSSPairDesigner.designTSSPair()

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    TSSConstructor con = new DefaultTSSConstructor();
    DefaultTSSPairDesigner tpd = new DefaultTSSPairDesigner(con);
 
    ProbeMakerTarget target = new PadlockTarget("T1","ATACAGTCGTCCGGGTCGAA|AAGAGCATCGACGCGGATCAAGCCTATCGTCACGCGA","Target 1");
    TSSPair pair = tpd.designTSSPair(target);
   
    Probe p = new DefaultProbe(pair,0,0,NucleotideSequence.DNA);
 
    plc.checkTemplatingByTarget(p);
   
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Examples of org.moltools.apps.probemaker.design.DefaultTSSPairDesigner.designTSSPair()

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    //Get a variant of an allele specific padlock
    AlleleSpecificPadlockTarget target2 = new AlleleSpecificPadlockTarget("T2","ATACAGTCGTCCGGGTCGAAWAGAGCATCGACGCGGATCAA","Target 2");
    target = target2.expand().get(0);
   
    pair = tpd.designTSSPair(target);
   
    p = new DefaultProbe(pair,0,0,NucleotideSequence.DNA);
    plc.checkTemplatingByTarget(p);
    assertEquals(0,ProbeMakerPropertyUtils.getAllMessages(p).size());
   
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