haplotypes[j].setGenomeLocation(genomeLocParser.createGenomeLoc("chr1",1,haplotypes[j].length() + 1));
}
result[i] = new Object[] { Collections.singletonList(ar),Arrays.asList(Arrays.asList(haplotypes))};
for (int j = 0; j < TEN_KS_GRAPH_AND_HAPLOTYPES.length; j++) {
final ReadThreadingGraph rtg10 = new ReadThreadingGraph((String) TEN_KS_GRAPH_AND_HAPLOTYPES[j][0]);
final AssemblyResult ar10 = new AssemblyResult(AssemblyResult.Status.ASSEMBLED_SOME_VARIATION,rtg10.convertToSequenceGraph());
ar10.setThreadingGraph(rtg10);
final Object[] haplotypeStrings10 = (Object[]) TEN_KS_GRAPH_AND_HAPLOTYPES[j][1];
final Haplotype[] haplotype10 = new Haplotype[haplotypeStrings10.length];
for (int k = 0; k < haplotypeStrings10.length; k++) {
haplotype10[k] = new Haplotype(((String)haplotypeStrings10[k]).getBytes(),false);