Examples of containsSample()

Examples of edu.msu.cme.rdp.unifrac.UnifracTaxon.containsSample()

148
149
150
151
152
153
154
155
156
157
158
                    samplePool.addAll(allSamplesMap.get(samples.get(sample2)));
                    Collections.shuffle(samplePool);

                    for (int taxid : leaves) {
                        UnifracTaxon t = taxonMap.get(taxid).getTaxon();
                        if (t.containsSample(samples.get(sample1)) || t.containsSample(samples.get(sample2))) {
                            t.resetSamples(samplePool);
                        }
                    }

                    this.refreshInnerTaxa();
View Full Code Here

Examples of edu.msu.cme.rdp.unifrac.UnifracTaxon.containsSample()

148
149
150
151
152
153
154
155
156
157
158
                    samplePool.addAll(allSamplesMap.get(samples.get(sample2)));
                    Collections.shuffle(samplePool);

                    for (int taxid : leaves) {
                        UnifracTaxon t = taxonMap.get(taxid).getTaxon();
                        if (t.containsSample(samples.get(sample1)) || t.containsSample(samples.get(sample2))) {
                            t.resetSamples(samplePool);
                        }
                    }

                    this.refreshInnerTaxa();
View Full Code Here

Examples of edu.msu.cme.rdp.unifrac.UnifracTaxon.containsSample()

196
197
198
199
200
201
202
203
204
205
206
            while (parent.getParent() != null) {
                UnifracTaxon taxon = parent.getTaxon();
                if (!touched.contains(parent.getTaxon().getTaxid())) {
                    touched.add(taxon.getTaxid());
                    if (parent.getTaxon().containsSample(sample1) && taxon.containsSample(sample2)) {
                        combined += taxon.getBl();
                    } else if (taxon.containsSample(sample1) || taxon.containsSample(sample2)) {
                        unique += taxon.getBl();
                    }
                }
View Full Code Here

Examples of edu.msu.cme.rdp.unifrac.UnifracTaxon.containsSample()

198
199
200
201
202
203
204
205
206
207
208
                UnifracTaxon taxon = parent.getTaxon();
                if (!touched.contains(parent.getTaxon().getTaxid())) {
                    touched.add(taxon.getTaxid());
                    if (parent.getTaxon().containsSample(sample1) && taxon.containsSample(sample2)) {
                        combined += taxon.getBl();
                    } else if (taxon.containsSample(sample1) || taxon.containsSample(sample2)) {
                        unique += taxon.getBl();
                    }
                }
                parent = parent.getParent();
            }
View Full Code Here

Examples of edu.msu.cme.rdp.unifrac.UnifracTaxon.containsSample()

198
199
200
201
202
203
204
205
206
207
208
                UnifracTaxon taxon = parent.getTaxon();
                if (!touched.contains(parent.getTaxon().getTaxid())) {
                    touched.add(taxon.getTaxid());
                    if (parent.getTaxon().containsSample(sample1) && taxon.containsSample(sample2)) {
                        combined += taxon.getBl();
                    } else if (taxon.containsSample(sample1) || taxon.containsSample(sample2)) {
                        unique += taxon.getBl();
                    }
                }
                parent = parent.getParent();
            }
View Full Code Here
TOP
Copyright © 2018 www.massapi.com. All rights reserved.
All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.