Examples of addDefaultOntologyHeader()

Examples of org.obolibrary.oboformat.model.OBODoc.addDefaultOntologyHeader()

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            throws IOException, OWLOntologyCreationException,
            OWLOntologyStorageException {
        OWLAPIObo2Owl bridge = new OWLAPIObo2Owl(manager);
        OBOFormatParser p = new OBOFormatParser();
        OBODoc obodoc = p.parse(new URL(iri));
        obodoc.addDefaultOntologyHeader(defaultOnt);
        OWLOntology ontology = bridge.convert(obodoc);
        IRI outputStream = IRI.create(outFile);
        OWLDocumentFormat format = new RDFXMLDocumentFormat();
        LOG.info("saving to {} fmt={}", outputStream, format);
        manager.saveOntology(ontology, format, outputStream);
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Examples of org.obolibrary.oboformat.model.OBODoc.addDefaultOntologyHeader()

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    @Test
    public void testMultiLineDefinitions() throws Exception {
        // create minimal ontology
        OBODoc oboDocSource = new OBODoc();
        oboDocSource.setHeaderFrame(new Frame(FrameType.HEADER));
        oboDocSource.addDefaultOntologyHeader("caro");
        // add source frame that contains at least one new line
        Frame sourceFrame = new Frame(FrameType.TERM);
        sourceFrame.setId("CARO:0000049");
        sourceFrame
                .addClause(new Clause(
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