Examples of VisibilityJson

Examples of io.lumify.web.clientapi.model.VisibilityJson

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                GeoPoint geoPoint = new GeoPoint(loc.getGeoname().getLatitude(), loc.getGeoname().getLongitude(), LumifyProperties.TERM_MENTION_TITLE.getPropertyValue(termMention));
                String title = toSign(loc);
                String termMentionConceptType = LumifyProperties.TERM_MENTION_CONCEPT_TYPE.getPropertyValue(termMention);
                String conceptType = getOntologyClassUri(loc, termMentionConceptType);

                VisibilityJson sourceVertexVisibilityJson = LumifyProperties.VISIBILITY_JSON.getPropertyValue(sourceVertex);
                Map<String, Object> metadata = new HashMap<String, Object>();
                LumifyProperties.VISIBILITY_JSON.setMetadata(metadata, sourceVertexVisibilityJson);
                ElementBuilder<Vertex> resolvedToVertexBuilder = getGraph().prepareVertex(id, sourceVertex.getVisibility())
                        .addPropertyValue(MULTI_VALUE_PROPERTY_KEY, geoLocationIri, geoPoint, metadata, sourceVertex.getVisibility());
                LumifyProperties.CONCEPT_TYPE.addPropertyValue(resolvedToVertexBuilder, MULTI_VALUE_PROPERTY_KEY, conceptType, metadata, sourceVertex.getVisibility());
                LumifyProperties.SOURCE.addPropertyValue(resolvedToVertexBuilder, MULTI_VALUE_PROPERTY_KEY, "CLAVIN", metadata, sourceVertex.getVisibility());
                LumifyProperties.TITLE.addPropertyValue(resolvedToVertexBuilder, MULTI_VALUE_PROPERTY_KEY, title, metadata, sourceVertex.getVisibility());
                LumifyProperties.VISIBILITY_JSON.addPropertyValue(resolvedToVertexBuilder, MULTI_VALUE_PROPERTY_KEY, sourceVertexVisibilityJson, metadata, sourceVertex.getVisibility());
                Vertex resolvedToVertex = resolvedToVertexBuilder.save(authorizations);
                getGraph().flush();

                String edgeId = sourceVertex.getId() + "-" + artifactHasEntityIri + "-" + resolvedToVertex.getId();
                Edge resolvedEdge = getGraph().prepareEdge(edgeId, sourceVertex, resolvedToVertex, artifactHasEntityIri, sourceVertex.getVisibility()).save(authorizations);
                LumifyProperties.VISIBILITY_JSON.addPropertyValue(resolvedEdge, MULTI_VALUE_PROPERTY_KEY, sourceVertexVisibilityJson, metadata, sourceVertex.getVisibility(), authorizations);
                VisibilityJson visibilityJson = LumifyProperties.TERM_MENTION_VISIBILITY_JSON.getPropertyValue(termMention);
                if (visibilityJson != null && visibilityJson.getWorkspaces().size() > 0) {
                    Set<String> workspaceIds = visibilityJson.getWorkspaces();
                    for (String workspaceId : workspaceIds) {
                        workspaceRepository.updateEntityOnWorkspace(workspaceRepository.findById(workspaceId, user), id, false, null, user);
                    }
                }
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Examples of io.lumify.web.clientapi.model.VisibilityJson

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        Iterator<SearchResult<Match>> searchResults = tree.search(text.toCharArray());
        Vertex sourceVertex = (Vertex) data.getElement();
        List<Vertex> termMentions = new ArrayList<Vertex>();
        while (searchResults.hasNext()) {
            SearchResult searchResult = searchResults.next();
            VisibilityJson visibilityJson = data.getVisibilitySourceJson();
            List<Vertex> newTermMentions = outputResultToTermMention(sourceVertex, searchResult, data.getProperty().getKey(), visibilityJson, data.getVisibility());
            termMentions.addAll(newTermMentions);
            getGraph().flush();
        }
        applyTermMentionFilters(sourceVertex, termMentions);
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Examples of io.lumify.web.clientapi.model.VisibilityJson

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            }
            return result;
        } else if (value instanceof JSONObject) {
            JSONObject json = (JSONObject) value;
            if (json.length() == 2 && json.has("source") && json.has("workspaces")) {
                VisibilityJson visibilityJson = new VisibilityJson();
                visibilityJson.setSource(json.getString("source"));
                JSONArray workspacesJson = json.getJSONArray("workspaces");
                for (int i = 0; i < workspacesJson.length(); i++) {
                    visibilityJson.addWorkspace(workspacesJson.getString(i));
                }
                return visibilityJson;
            }
            Map<String, Object> result = new HashMap<String, Object>();
            for (Object key : json.keySet()) {
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Examples of io.lumify.web.clientapi.model.VisibilityJson

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    public static Object fromClientApiValue(Object obj) {
        if (obj instanceof Map) {
            Map map = (Map) obj;
            if (map.size() == 2 && map.containsKey("source") && map.containsKey("workspaces")) {
                VisibilityJson visibilityJson = new VisibilityJson();
                visibilityJson.setSource((String) map.get("source"));
                List<String> workspaces = (List<String>) map.get("workspaces");
                for (String workspace : workspaces) {
                    visibilityJson.addWorkspace(workspace);
                }
                return visibilityJson;
            }
        }
        return obj;
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Examples of io.lumify.web.clientapi.model.VisibilityJson

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        String workspaceId = getActiveWorkspaceId(request);
        Workspace workspace = workspaceRepository.findById(workspaceId, user);

        Authorizations authorizations = getAuthorizations(request, user);

        VisibilityJson visibilityJson = GraphUtil.updateVisibilitySourceAndAddWorkspaceId(null, visibilitySource, workspaceId);
        LumifyVisibility visibility = this.visibilityTranslator.toVisibility(visibilityJson);
        if (!graph.isVisibilityValid(visibility.getVisibility(), authorizations)) {
            LOGGER.warn("%s is not a valid visibility for %s user", visibilitySource, user.getDisplayName());
            respondWithBadRequest(response, "visibilitySource", getString(request, "visibility.invalid"));
            chain.next(request, response);
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Examples of io.lumify.web.clientapi.model.VisibilityJson

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    }

    private String[] getUniqueVisibilitySources(Iterable<Vertex> vertices) {
        Set<String> visibilitySourceSet = new HashSet<String>();
        for (Vertex vertex : vertices) {
            VisibilityJson visibilityJson = LumifyProperties.VISIBILITY_JSON.getPropertyValue(vertex);
            if (visibilityJson != null) {
                String visibilitySource = visibilityJson.getSource();
                if (visibilitySource != null && visibilitySource.trim().length() > 0) {
                    visibilitySourceSet.add(visibilitySource);
                }
            }
        }
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Examples of io.lumify.web.clientapi.model.VisibilityJson

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            respondWithNotFound(response);
            return;
        }
        ElementMutation<Vertex> entityVertexMutation = entityVertex.prepareMutation();

        VisibilityJson visibilityJson = getLumifyVisibility(entityVertex, workspaceId);
        LumifyVisibility lumifyVisibility = visibilityTranslator.toVisibility(visibilityJson);

        Map<String, Object> metadata = new HashMap<String, Object>();
        LumifyProperties.VISIBILITY_JSON.setMetadata(metadata, visibilityJson);

        String title = String.format("Image of %s", LumifyProperties.TITLE.getPropertyValue(entityVertex));
        ElementBuilder<Vertex> artifactVertexBuilder = convertToArtifact(file, title, visibilityJson, metadata, lumifyVisibility, authorizations);
        Vertex artifactVertex = artifactVertexBuilder.save(authorizations);
        this.graph.flush();

        auditRepository.auditVertexElementMutation(AuditAction.UPDATE, artifactVertexBuilder, artifactVertex, "", user, lumifyVisibility.getVisibility());

        entityVertexMutation.setProperty(LumifyProperties.ENTITY_IMAGE_VERTEX_ID.getPropertyName(), artifactVertex.getId(), metadata, lumifyVisibility.getVisibility());
        auditRepository.auditVertexElementMutation(AuditAction.UPDATE, entityVertexMutation, entityVertex, "", user, lumifyVisibility.getVisibility());
        entityVertex = entityVertexMutation.save(authorizations);
        graph.flush();

        List<Edge> existingEdges = toList(entityVertex.getEdges(artifactVertex, Direction.BOTH, entityHasImageIri, authorizations));
        if (existingEdges.size() == 0) {
            EdgeBuilder edgeBuilder = graph.prepareEdge(entityVertex, artifactVertex, entityHasImageIri, lumifyVisibility.getVisibility());
            LumifyProperties.VISIBILITY_JSON.setProperty(edgeBuilder, visibilityJson, lumifyVisibility.getVisibility());
            Edge edge = edgeBuilder.save(authorizations);
            auditRepository.auditRelationship(AuditAction.CREATE, entityVertex, artifactVertex, edge, "", "", user, lumifyVisibility.getVisibility());
        }

        this.workspaceRepository.updateEntityOnWorkspace(workspace, artifactVertex.getId(), false, null, user);
        this.workspaceRepository.updateEntityOnWorkspace(workspace, entityVertex.getId(), false, null, user);

        graph.flush();
        workQueueRepository.pushGraphPropertyQueue(artifactVertex, null, LumifyProperties.RAW.getPropertyName(), workspaceId, visibilityJson.getSource());

        respondWithClientApiObject(response, ClientApiConverter.toClientApi(entityVertex, workspaceId, authorizations));
    }
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Examples of io.lumify.web.clientapi.model.VisibilityJson

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        respondWithClientApiObject(response, ClientApiConverter.toClientApi(entityVertex, workspaceId, authorizations));
    }

    private VisibilityJson getLumifyVisibility(Vertex entityVertex, String workspaceId) {
        VisibilityJson visibilityJson = LumifyProperties.VISIBILITY_JSON.getPropertyValue(entityVertex);
        if (visibilityJson == null) {
            visibilityJson = new VisibilityJson();
        }
        String visibilitySource = visibilityJson.getSource();
        if (visibilitySource == null) {
            visibilitySource = "";
        }
        return GraphUtil.updateVisibilitySourceAndAddWorkspaceId(visibilityJson, visibilitySource, workspaceId);
    }
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Examples of io.lumify.web.clientapi.model.VisibilityJson

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        List<Attribute> attributeCollection = new ArrayList<Attribute>();
        if (analystsNotebookExportConfiguration.includeProperties()) {
            attributeCollection.addAll(Attribute.createCollectionFromVertex(vertex, ontologyRepository));
        }
        if (analystsNotebookExportConfiguration.includeVisibility()) {
            VisibilityJson visibilityJson = LumifyProperties.VISIBILITY_JSON.getPropertyValue(vertex);
            if (visibilityJson != null) {
                String visibilitySource = visibilityJson.getSource();
                if (visibilitySource != null && visibilitySource.trim().length() > 0) {
                    String label = analystsNotebookExportConfiguration.getVisibilityLabel();
                    Attribute visibilityAttribute = new Attribute(label, visibilitySource);
                    attributeCollection.add(visibilityAttribute);
                }
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Examples of io.lumify.web.clientapi.model.VisibilityJson

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    @Override
    protected void setup(Context context) throws IOException, InterruptedException {
        super.setup(context);
        Map configurationMap = SecureGraphMRUtils.toMap(context.getConfiguration());
        this.visibility = new Visibility("");
        this.visibilityJson = new VisibilityJson();
        this.authorizations = new AccumuloAuthorizations();
        this.user = new SystemUser(null);
        VersionService versionService = new VersionService();
        Configuration configuration = new HashMapConfigurationLoader(configurationMap).createConfiguration();
        this.auditRepository = new SecureGraphAuditRepository(null, versionService, configuration, null, userRepository);
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