Examples of VCFWriterArgumentTypeDescriptor

    /**
     * Subclasses of CommandLinePrograms can provide their own types of command-line arguments.
     * @return A collection of type descriptors generating implementation-dependent placeholders.
     */
    protected Collection<ArgumentTypeDescriptor> getArgumentTypeDescriptors() {
        return Arrays.asList( new VCFWriterArgumentTypeDescriptor(engine,System.out,argumentSources),
                              new SAMFileWriterArgumentTypeDescriptor(engine,System.out),
                              new OutputStreamArgumentTypeDescriptor(engine,System.out) );
    }

Examples of org.broadinstitute.gatk.engine.io.stubs.VCFWriterArgumentTypeDescriptor

    }


    @Override
    protected Collection<ArgumentTypeDescriptor> getArgumentTypeDescriptors() {
        List<ArgumentTypeDescriptor> typeDescriptors = new ArrayList<ArgumentTypeDescriptor>();
        typeDescriptors.add(new VCFWriterArgumentTypeDescriptor(GATKEngine,System.out,Collections.<Object>emptyList()));
        typeDescriptors.add(new SAMFileWriterArgumentTypeDescriptor(GATKEngine,System.out));
        typeDescriptors.add(new OutputStreamArgumentTypeDescriptor(GATKEngine,System.out));
        return typeDescriptors;
    }

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