Package uk.ac.bbsrc.tgac.miso.core.data.type

Examples of uk.ac.bbsrc.tgac.miso.core.data.type.PlatformType

119
120
121
122
123
124
125
126
127
128
129
130
131
  }

  private String getContainerOptions(SequencerReference sr) throws IOException {
    StringBuilder b = new StringBuilder();
    b.append("<span id='containerspan'>Containers: ");
    PlatformType pt = sr.getPlatform().getPlatformType();
    for (int i = 0; i < sr.getPlatform().getNumContainers(); i++) {
      b.append("<input id='container" + (i + 1) + "' name='containerselect' onchange='Container.ui.changeContainer(" + sr.getPlatform().getNumContainers() + ", \"" + pt.getKey() + "\", " + sr.getId() + ");' type='radio' value='" + (i + 1) + "'/>" + (i + 1));
    }
    b.append("</span><br/>");
    b.append("<div id='containerdiv' class='note ui-corner-all'> </div>");
    return b.toString();
  }
View Full Code Here
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
  }

  public JSONObject changeContainer(HttpSession session, JSONObject json) {
    if (json.has("platform")) {
      String platform = json.getString("platform");
      PlatformType pt = PlatformType.get(platform);
      if (pt != null) {
        if (pt.equals(PlatformType.ILLUMINA)) {
          return changeIlluminaContainer(session, json);
        }
        else if (pt.equals(PlatformType.LS454)) {
          return changeLS454Container(session, json);
        }
        else if (pt.equals(PlatformType.SOLID)) {
          return changeSolidContainer(session, json);
        }
        /*
        else if (pt.equals(PlatformType.IONTORRENT)) {
          return null;
        }
        */
        else if (pt.equals(PlatformType.PACBIO)) {
          return changePacBioContainer(session, json);
        }
        else {
          return JSONUtils.SimpleJSONError("Unsupported platform type: " + platform);
        }
View Full Code Here
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
  }

  public JSONObject changeChamber(HttpSession session, JSONObject json) {
    if (json.has("platform")) {
      String platform = json.getString("platform");
      PlatformType pt = PlatformType.get(platform);
      if (pt != null) {
        if (pt.equals(PlatformType.LS454)) {
          return changeLS454Chamber(session, json);
        }
        else if (pt.equals(PlatformType.SOLID)) {
          return changeSolidChamber(session, json);
        }
        else if (pt.equals(PlatformType.PACBIO)) {
          return changePacBioChamber(session, json);
        }
        else {
          return JSONUtils.SimpleJSONError("Unrecognised platform type: " + platform);
        }
View Full Code Here
103
104
105
106
107
108
109
110
111
112
113
    return requestManager.listAllPlatforms();
  }

  public Collection<? extends Pool> populateAvailablePools(Experiment experiment) throws IOException {
    if (experiment.getPlatform() != null) {
      PlatformType platformType = experiment.getPlatform().getPlatformType();
      ArrayList<Pool> pools = new ArrayList<Pool>();
      for (Pool p : requestManager.listAllPoolsByPlatform(platformType)) {
        if (experiment.getPool() == null || !experiment.getPool().equals(p)) {
          pools.add(p);
        }
View Full Code Here
743
744
745
746
747
748
749
750
751
752
753
      }

      Pool<? extends Poolable> p = null;
      try {
        p = dataObjectFactory.getPool();
        PlatformType pt = PlatformType.get(rs.getString("platformType"));
        p.setPlatformType(pt);

        if (pt != null) {
          Collection<? extends Poolable> poolables = listPoolableElementsByPoolId(id);
          p.setPoolableElements(poolables);
View Full Code Here
TOP

Related Classes of uk.ac.bbsrc.tgac.miso.core.data.type.PlatformType

  • uk.ac.bbsrc.tgac.miso.spring.ajax.ContainerControllerHelperService
  • uk.ac.bbsrc.tgac.miso.spring.ajax.ExperimentWizardControllerHelperService
  • uk.ac.bbsrc.tgac.miso.spring.ajax.PoolWizardControllerHelperService
  • uk.ac.bbsrc.tgac.miso.spring.ajax.RunControllerHelperService
  • uk.ac.bbsrc.tgac.miso.sqlstore.SQLPoolDAO$PoolMapper
  • uk.ac.bbsrc.tgac.miso.sqlstore.SQLRunDAO$RunMapper
  • uk.ac.bbsrc.tgac.miso.webapp.controller.ExperimentWizardController
    • Copyright © 2018 www.massapicom. All rights reserved.
    All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.