Examples of TrueFalseIconRenderer

Examples of no.uib.jsparklines.extra.TrueFalseIconRenderer

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                PlotOrientation.HORIZONTAL, -10.0, 10.0, Color.RED, peptideShakerGUI.getSparklineColor(), Color.lightGray, 0));
        ((JSparklinesBarChartTableCellRenderer) goMappingsTable.getColumn("Log2 Diff").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth());
        goMappingsTable.getColumn("Frequency (%)").setCellRenderer(new JSparklinesTableCellRenderer(
                JSparklinesTableCellRenderer.PlotType.barChart,
                PlotOrientation.HORIZONTAL, 0.0, 100.0));
        goMappingsTable.getColumn("  ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/selected_green.png")),
                null,
                "Selected", null));

        // make the tabs in the tabbed pane go from right to left
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Examples of no.uib.jsparklines.extra.TrueFalseIconRenderer

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        peptideInferenceTooltipMap.put(PSParameter.RELATED_AND_UNRELATED, "Belongs to a group of related and unrelated proteins");
        peptideInferenceTooltipMap.put(PSParameter.UNRELATED, "Belongs to unrelated proteins");

        peptideTable.getColumn("PI").setCellRenderer(new JSparklinesIntegerColorTableCellRenderer(peptideShakerGUI.getSparklineColor(), peptideInferenceColorMap, peptideInferenceTooltipMap));
        peptideTable.getColumn("Start").setCellRenderer(new JSparklinesIntervalChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100d, 100d, peptideShakerGUI.getSparklineColor()));
        peptideTable.getColumn("PDB").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/pdb.png")),
                null,
                "Mapped to PDB Structure", null));
        peptideTable.getColumn("").setCellRenderer(new JSparklinesIntegerIconTableCellRenderer(MatchValidationLevel.getIconMap(this.getClass()), MatchValidationLevel.getTooltipMap()));
        peptideTable.getColumn("  ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/star_yellow.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                "Starred", null, null));
    }
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Examples of no.uib.jsparklines.extra.TrueFalseIconRenderer

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        proteinInferenceTooltipMap.put(PSParameter.RELATED_AND_UNRELATED, "Belongs to a group of related and unrelated proteins");
        proteinInferenceTooltipMap.put(PSParameter.UNRELATED, "Belongs to unrelated proteins");

        peptidesTable.getColumn("PI").setCellRenderer(new JSparklinesIntegerColorTableCellRenderer(Color.lightGray, proteinInferenceColorMap, proteinInferenceTooltipMap));
        relatedPeptidesTable.getColumn("PI").setCellRenderer(new JSparklinesIntegerColorTableCellRenderer(Color.lightGray, proteinInferenceColorMap, proteinInferenceTooltipMap));
        peptidesTable.getColumn("   ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/star_yellow.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                "Starred", null, null));
        relatedPeptidesTable.getColumn("   ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/star_yellow.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                "Starred", null, null));

        // set up the PTM confidence color map
        HashMap<Integer, Color> ptmConfidenceColorMap = new HashMap<Integer, Color>();
        ptmConfidenceColorMap.put(PtmScoring.NOT_FOUND, Color.lightGray);
        ptmConfidenceColorMap.put(PtmScoring.RANDOM, Color.RED);
        ptmConfidenceColorMap.put(PtmScoring.DOUBTFUL, Color.ORANGE);
        ptmConfidenceColorMap.put(PtmScoring.CONFIDENT, Color.YELLOW);
        ptmConfidenceColorMap.put(PtmScoring.VERY_CONFIDENT, peptideShakerGUI.getSparklineColor());

        // set up the PTM confidence tooltip map
        ptmConfidenceTooltipMap = new HashMap<Integer, String>();
        ptmConfidenceTooltipMap.put(-1, "(No PTMs)");
        ptmConfidenceTooltipMap.put(PtmScoring.RANDOM, "Random Assignment");
        ptmConfidenceTooltipMap.put(PtmScoring.DOUBTFUL, "Doubtful Assignment");
        ptmConfidenceTooltipMap.put(PtmScoring.CONFIDENT, "Confident Assignment");
        ptmConfidenceTooltipMap.put(PtmScoring.VERY_CONFIDENT, "Very Confident Assignment");

        peptidesTable.getColumn("PTM").setCellRenderer(new JSparklinesIntegerColorTableCellRenderer(Color.lightGray, ptmConfidenceColorMap, ptmConfidenceTooltipMap));
        relatedPeptidesTable.getColumn("PTM").setCellRenderer(new JSparklinesIntegerColorTableCellRenderer(Color.lightGray, ptmConfidenceColorMap, ptmConfidenceTooltipMap));
        selectedPsmsTable.getColumn("PTM").setCellRenderer(new JSparklinesIntegerColorTableCellRenderer(Color.lightGray, ptmConfidenceColorMap, ptmConfidenceTooltipMap));
        relatedPsmsTable.getColumn("PTM").setCellRenderer(new JSparklinesIntegerColorTableCellRenderer(Color.lightGray, ptmConfidenceColorMap, ptmConfidenceTooltipMap));

        peptidesTable.getColumn("Peptide").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) peptidesTable.getColumn("Peptide").getCellRenderer()).showNumberAndChart(
                true, TableProperties.getLabelWidth() - 20, peptideShakerGUI.getScoreAndConfidenceDecimalFormat());
        peptidesTable.getColumn("  ").setCellRenderer(new JSparklinesIntegerIconTableCellRenderer(MatchValidationLevel.getIconMap(this.getClass()), MatchValidationLevel.getTooltipMap()));

        relatedPeptidesTable.getColumn("Peptide").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) relatedPeptidesTable.getColumn("Peptide").getCellRenderer()).showNumberAndChart(
                true, TableProperties.getLabelWidth() - 20, peptideShakerGUI.getScoreAndConfidenceDecimalFormat());
        relatedPeptidesTable.getColumn("  ").setCellRenderer(new JSparklinesIntegerIconTableCellRenderer(MatchValidationLevel.getIconMap(this.getClass()), MatchValidationLevel.getTooltipMap()));

        selectedPsmsTable.getColumn("Charge").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 10.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) selectedPsmsTable.getColumn("Charge").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() - 30);
        selectedPsmsTable.getColumn("  ").setCellRenderer(new JSparklinesIntegerIconTableCellRenderer(MatchValidationLevel.getIconMap(this.getClass()), MatchValidationLevel.getTooltipMap()));
        selectedPsmsTable.getColumn("RT").setCellRenderer(new JSparklinesIntervalChartTableCellRenderer(PlotOrientation.HORIZONTAL, 0d,
                1000d, 10d, peptideShakerGUI.getSparklineColor(), peptideShakerGUI.getSparklineColor()));
        ((JSparklinesIntervalChartTableCellRenderer) selectedPsmsTable.getColumn("RT").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() + 5);
        ((JSparklinesIntervalChartTableCellRenderer) selectedPsmsTable.getColumn("RT").getCellRenderer()).showReferenceLine(true, 0.02, java.awt.Color.BLACK);
        selectedPsmsTable.getColumn("   ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/star_yellow.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                "Starred", null, null));

        relatedPsmsTable.getColumn("Charge").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 10.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) relatedPsmsTable.getColumn("Charge").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() - 30);
        relatedPsmsTable.getColumn("  ").setCellRenderer(new JSparklinesIntegerIconTableCellRenderer(MatchValidationLevel.getIconMap(this.getClass()), MatchValidationLevel.getTooltipMap()));
        relatedPsmsTable.getColumn("RT").setCellRenderer(new JSparklinesIntervalChartTableCellRenderer(PlotOrientation.HORIZONTAL, 0d,
                1000d, 10d, peptideShakerGUI.getSparklineColor(), peptideShakerGUI.getSparklineColor()));
        ((JSparklinesIntervalChartTableCellRenderer) relatedPsmsTable.getColumn("RT").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() + 5);
        ((JSparklinesIntervalChartTableCellRenderer) relatedPsmsTable.getColumn("RT").getCellRenderer()).showReferenceLine(true, 0.02, java.awt.Color.BLACK);
        relatedPsmsTable.getColumn("   ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/star_yellow.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                "Starred", null, null));
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Examples of no.uib.jsparklines.extra.TrueFalseIconRenderer

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        projectsTable.getColumn("Accession").setCellRenderer(new HtmlLinksRenderer(TableProperties.getSelectedRowHtmlTagFontColor(), TableProperties.getNotSelectedRowHtmlTagFontColor()));
        assaysTable.getColumn("Accession").setCellRenderer(new HtmlLinksRenderer(TableProperties.getSelectedRowHtmlTagFontColor(), TableProperties.getNotSelectedRowHtmlTagFontColor()));
        filesTable.getColumn("Assay").setCellRenderer(new HtmlLinksRenderer(TableProperties.getSelectedRowHtmlTagFontColor(), TableProperties.getNotSelectedRowHtmlTagFontColor()));
        filesTable.getColumn("Download").setCellRenderer(new HtmlLinksRenderer(TableProperties.getSelectedRowHtmlTagFontColor(), TableProperties.getNotSelectedRowHtmlTagFontColor()));

        filesTable.getColumn("  ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/accept.png")),
                null,
                "Reshakeable", null));

        projectsTableToolTips = new ArrayList<String>();
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Examples of no.uib.jsparklines.extra.TrueFalseIconRenderer

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        ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("Score").getCellRenderer()).showNumberAndChart(
                true, TableProperties.getLabelWidth() - 20, peptideShakerGUI.getScoreAndConfidenceDecimalFormat());
        proteinTable.getColumn("Coverage").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("Coverage").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth());
        ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("Coverage").getCellRenderer()).setMinimumChartValue(5d);
        proteinTable.getColumn("S").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/star_yellow.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                "Starred", null, null));
        proteinTable.getColumn("H").setCellRenderer(new NimbusCheckBoxRenderer());

        ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("#Peptides").getCellRenderer()).setMaxValue(peptideShakerGUI.getMetrics().getMaxNPeptides());
        ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("#Spectra").getCellRenderer()).setMaxValue(peptideShakerGUI.getMetrics().getMaxNSpectra());
        ((JSparklinesBarChartTableCellRenderer) proteinTable.getColumn("MS2 Quant.").getCellRenderer()).setMaxValue(peptideShakerGUI.getMetrics().getMaxSpectrumCounting());

        // set up the peptide inference color map
        HashMap<Integer, Color> peptideInferenceColorMap = new HashMap<Integer, Color>();
        peptideInferenceColorMap.put(PSParameter.NOT_GROUP, peptideShakerGUI.getSparklineColor());
        peptideInferenceColorMap.put(PSParameter.RELATED, Color.YELLOW);
        peptideInferenceColorMap.put(PSParameter.RELATED_AND_UNRELATED, Color.ORANGE);
        peptideInferenceColorMap.put(PSParameter.UNRELATED, Color.RED);

        // set up the peptide inference tooltip map
        HashMap<Integer, String> peptideInferenceTooltipMap = new HashMap<Integer, String>();
        peptideInferenceTooltipMap.put(PSParameter.NOT_GROUP, "Unique to a single protein");
        peptideInferenceTooltipMap.put(PSParameter.RELATED, "Belongs to a group of related proteins");
        peptideInferenceTooltipMap.put(PSParameter.RELATED_AND_UNRELATED, "Belongs to a group of related and unrelated proteins");
        peptideInferenceTooltipMap.put(PSParameter.UNRELATED, "Belongs to unrelated proteins");

        peptideTable.getColumn("PI").setCellRenderer(new JSparklinesIntegerColorTableCellRenderer(peptideShakerGUI.getSparklineColor(), peptideInferenceColorMap, peptideInferenceTooltipMap));
        peptideTable.getColumn("Confidence").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
        peptideTable.getColumn("#Spectra").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) peptideTable.getColumn("Confidence").getCellRenderer()).showNumberAndChart(
                true, TableProperties.getLabelWidth() - 20, peptideShakerGUI.getScoreAndConfidenceDecimalFormat());
        peptideTable.getColumn("Score").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) peptideTable.getColumn("Score").getCellRenderer()).showNumberAndChart(
                true, TableProperties.getLabelWidth() - 20, peptideShakerGUI.getScoreAndConfidenceDecimalFormat());
        ((JSparklinesBarChartTableCellRenderer) peptideTable.getColumn("#Spectra").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() + 5);
        peptideTable.getColumn("S").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/star_yellow.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                "Starred", null, null));
        peptideTable.getColumn("H").setCellRenderer(new NimbusCheckBoxRenderer());

        ((JSparklinesBarChartTableCellRenderer) peptideTable.getColumn("#Spectra").getCellRenderer()).setMaxValue(peptideShakerGUI.getMetrics().getMaxNSpectra()); // @TODO: this is not the correct max value

        psmTable.getColumn("S").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/star_yellow.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                "Starred", null, null));
        psmTable.getColumn("H").setCellRenderer(new NimbusCheckBoxRenderer());
View Full Code Here

Examples of no.uib.jsparklines.extra.TrueFalseIconRenderer

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        proteinTable.getColumn("Coverage").setCellRenderer(new JSparklinesTwoValueBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 100.0,
                peptideShakerGUI.getSparklineColor(), peptideShakerGUI.getUtilitiesUserPreferences().getSparklineColorNotFound(), true));
        ((JSparklinesTwoValueBarChartTableCellRenderer) proteinTable.getColumn("Coverage").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth(), new DecimalFormat("0.00"));
        proteinTable.getColumn("").setCellRenderer(new JSparklinesIntegerIconTableCellRenderer(MatchValidationLevel.getIconMap(this.getClass()), MatchValidationLevel.getTooltipMap()));
        proteinTable.getColumn("  ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/star_yellow.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                "Starred", null, null));
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Examples of no.uib.jsparklines.extra.TrueFalseIconRenderer

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        sparklineColors.add(peptideShakerGUI.getUtilitiesUserPreferences().getSparklineColorDoubtful());
        sparklineColors.add(nonValidatedColor);
        peptideTable.getColumn("#Spectra").setCellRenderer(new JSparklinesArrayListBarChartTableCellRenderer(PlotOrientation.HORIZONTAL, 10.0, sparklineColors, JSparklinesArrayListBarChartTableCellRenderer.ValueDisplayType.sumOfNumbers));
        ((JSparklinesArrayListBarChartTableCellRenderer) peptideTable.getColumn("#Spectra").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth(), new DecimalFormat("0"));
        peptideTable.getColumn("").setCellRenderer(new JSparklinesIntegerIconTableCellRenderer(MatchValidationLevel.getIconMap(this.getClass()), MatchValidationLevel.getTooltipMap()));
        peptideTable.getColumn("  ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/star_yellow.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                "Starred", null, null));
View Full Code Here

Examples of no.uib.jsparklines.extra.TrueFalseIconRenderer

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        ((JSparklinesBarChartTableCellRenderer) psmTable.getColumn("Mass Error").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth());
        psmTable.getColumn("Charge").setCellRenderer(new JSparklinesBarChartTableCellRenderer(PlotOrientation.HORIZONTAL,
                (double) ((PSMaps) peptideShakerGUI.getIdentification().getUrParam(new PSMaps())).getPsmSpecificMap().getMaxCharge(), peptideShakerGUI.getSparklineColor()));
        ((JSparklinesBarChartTableCellRenderer) psmTable.getColumn("Charge").getCellRenderer()).showNumberAndChart(true, TableProperties.getLabelWidth() - 30);
        psmTable.getColumn("").setCellRenderer(new JSparklinesIntegerIconTableCellRenderer(MatchValidationLevel.getIconMap(this.getClass()), MatchValidationLevel.getTooltipMap()));
        psmTable.getColumn("  ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/star_yellow.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                new ImageIcon(this.getClass().getResource("/icons/star_grey.png")),
                "Starred", null, null));
View Full Code Here

Examples of no.uib.jsparklines.extra.TrueFalseIconRenderer

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        neutralLossesTable.getColumn("  ").setMinWidth(30);

        chargesTable.getColumn("  ").setCellRenderer(new NimbusCheckBoxRenderer());
        neutralLossesTable.getColumn("  ").setCellRenderer(new NimbusCheckBoxRenderer());

        chargesTable.getColumn("  ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/selected_green.png")),
                null,
                "Selected", null));
        neutralLossesTable.getColumn("  ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/selected_green.png")),
                null,
                "Selected", null));
    }
View Full Code Here

Examples of no.uib.jsparklines.extra.TrueFalseIconRenderer

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        // Quality filters
        final DefaultTableModel tableModel = new FiltersTableModel();
        qualityFiltersTable.setModel(tableModel);
        qualityFiltersTable.getColumn("").setMaxWidth(50);
        qualityFiltersTable.getColumn(" ").setMaxWidth(50);
        qualityFiltersTable.getColumn(" ").setCellRenderer(new TrueFalseIconRenderer(
                new ImageIcon(this.getClass().getResource("/icons/accept.png")),
                new ImageIcon(this.getClass().getResource("/icons/Error_3.png")),
                "Yes", "No"));

        int valid = 0;
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