Examples of TestDescriptor


Examples of org.moltools.apps.probemaker.modules.TestDescriptor

  };
 
 
  public StringHeteroDimerModule() {
    super(new TestDescriptor[] {
           new TestDescriptor("Probe-probe heterodimer formation") //$NON-NLS-1$
          },descriptors);
   
    setData(KEY_WINDOW,new Integer(10));
    setData(KEY_STRINGENCY,new Integer(6));
  }
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Examples of org.moltools.apps.probemaker.modules.TestDescriptor

    "<i>Nucleic Acids Res.</i>, <b>31</b>, 1796-1802.</html>"; //$NON-NLS-1$
  }

  public PadlockLigationModule() {
    super(new TestDescriptor[] {
        new TestDescriptor("Padlock probe self-ligation"), //$NON-NLS-1$
        new TestDescriptor("Template for other probe") //$NON-NLS-1$
    },new DataDescriptor[] {
        new IntegerDescriptor("Min. 5' match length", //$NON-NLS-1$
            "Minimum number of matching bases on 5' end", //$NON-NLS-1$
            PadlockLigationCalculator.
            PROPERTY_PROBE_5_MATCH_LENGTH, 1, 100),
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Examples of org.moltools.apps.probemaker.modules.TestDescriptor

  static final String KEY_ALLOWED_COMPLEMENTARITY_SCORE = "ALLOWED_COMPLEMENTARITY_SCORE"; //$NON-NLS-1$
  static final String KEY_COMPLEMENTARITY_SCORE_LIMIT = "COMPLEMENTARITY_SCORE_LIMIT"; //$NON-NLS-1$
 
  public TmProbeDimerModule() {
    super(new TestDescriptor[] {
            new TestDescriptor("Probe-probe hetero-dimer formation"), //$NON-NLS-1$
            new TestDescriptor("Probe homo-dimer formation") //$NON-NLS-1$
           
          },
          new DataDescriptor[] {
              new DoubleDescriptor("Max Tm", //$NON-NLS-1$
                                  "Maximum Tm for " + //$NON-NLS-1$
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