Examples of TerminalMolecule

org.wymiwyg.rdf.molecules.TerminalMolecule
Terminal Molecule (T-molecule). A terminal molecule only uses grounded nodes and/or functionally grounded BNodes, and all its BNodes are close. A BNode bn in a molecule n has two states, namely ‘open’ and ‘close’. bn is said ‘close’ if it is functionally grounded and being used by exact one more triple in m, otherwise it is ‘open’.

Examples of org.wymiwyg.rdf.molecules.TerminalMolecule

        synchronized (BaseStoreImpl.this) {
          Set<NamedNode> tMoleculeRefs = metaStore.getAsserted(
              sources, moment, METAMODEL.TerminalMolecule);
          tMolecules = new HashSet<TerminalMolecule>();
          for (NamedNode tMoleculesRef : tMoleculeRefs) {
            TerminalMolecule tMolecule = moleculeStore
                .getTerminalMolecule(tMoleculesRef);
            tMolecules.add(tMolecule);
          }
          for (Entry<FunctionallyGroundedNode, FunctionallyGroundedNode> entry : fgNodeMap
              .entrySet()) {

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Examples of org.wymiwyg.rdf.molecules.TerminalMolecule

   * @param newNode
   */
  private static void replaceInTerminalMolecules(Set<TerminalMolecule> terminalMolecules, Set<? extends Node> replacingNodes, FunctionallyGroundedNode newNode) {
    Set<TerminalMolecule> newTerminalMolecules = new HashSet<TerminalMolecule>();
    for (Iterator<TerminalMolecule> iter = terminalMolecules.iterator(); iter.hasNext();) {
      TerminalMolecule current = iter.next();
      try {
        SimpleTerminalMolecule newMolecule = new SimpleTerminalMolecule();
        newMolecule.addAll(GraphUtil.replaceNode(current, replacingNodes, newNode));
        newMolecule.markFinalized();
        iter.remove();

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