Examples of TargetDecoySeries

    private static double getHighConfidenceThreshold(PsmSpecificMap psmSpecificMap, int charge, String spectrumFileName, Double fdrThreshold) {
        TargetDecoyResults trainingResults = new TargetDecoyResults();
        trainingResults.setClassicalEstimators(true);
        trainingResults.setClassicalValidation(true);
        trainingResults.setFdrLimit(fdrThreshold);
        TargetDecoySeries currentSeries = psmSpecificMap.getTargetDecoyMap(charge, spectrumFileName).getTargetDecoySeries();
        currentSeries.getFDRResults(trainingResults);
        return trainingResults.getConfidenceLimit();
    }

Examples of eu.isas.peptideshaker.scoring.targetdecoy.TargetDecoySeries

        }
        TargetDecoyResults trainingResults = new TargetDecoyResults();
        trainingResults.setClassicalEstimators(true);
        trainingResults.setClassicalValidation(true);
        trainingResults.setFnrLimit(fnrThreshold);
        TargetDecoySeries currentSeries = psmSpecificMap.getTargetDecoyMap(charge, spectrumFileName).getTargetDecoySeries();
        currentSeries.getFNRResults(trainingResults);
        return trainingResults.getConfidenceLimit();
    }

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