Examples of StructureImpl

Examples of org.biojava.bio.structure.StructureImpl

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   * sets Structure
   * @param structure
   */
  public void setStructure(Structure structure) {
    if (structure == null)
      structure = new StructureImpl();

    this.structure = structure;
  }
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Examples of org.biojava.bio.structure.StructureImpl

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   */
  @Override
  public AtomIterator getAtomIterator(Object clientFile) {
    if ( ! (clientFile instanceof Structure)) {

            return new ProjectedAtomIterator(new StructureImpl());
        }
       
        return new ProjectedAtomIterator(structure);
  }
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Examples of org.biojava.bio.structure.StructureImpl

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    g.addAtom(a);

    Chain c = new ChainImpl();
    c.addGroup(g);

    Structure s = new StructureImpl();
    s.addChain(c);

    setStructure(s);

    s.setPDBCode("1AND");

    executeCmd("select *; spacefill off;");

  }
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Examples of org.biojava.bio.structure.StructureImpl

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   * sets a new Structure to the display
   * @param struct
   */
  public void setStructure(Structure struct) {
    if (struct == null) {
      struct = new StructureImpl();
      initJmolDisplay();

    }

    this.structure = struct;
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Examples of org.eclipse.persistence.internal.jpa.config.structures.StructureImpl

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        getMetadata().getPLSQLTables().add(plsqlTable.getMetadata());
        return plsqlTable;
    }
   
    public Structure addStructure() {
        StructureImpl structure = new StructureImpl();
        getMetadata().getAttributes().getStructures().add(structure.getMetadata());
        return structure;
    }
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