Examples of SortSam

Examples of net.sf.picard.sam.SortSam

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        "VALIDATION_STRINGENCY=SILENT",
        "SORT_ORDER=" + sortOrder,
        "TMP_DIR=" + this.tempDir + "/sorttmp"
        };
   
    int ret = new SortSam().instanceMain(args);
    if (ret != 0) {
      throw new RuntimeException("SortSam failed");
    }
  }
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