Examples of SBMLWriter

org.sbml.jsbml.SBMLWriter

Provides methods for writing SBML to files, text strings or streams.

This {@link SBMLWriter} is just a wrapper for the actual implementation in{@link org.sbml.jsbml.xml.stax.SBMLWriter}.

This class is provided for compatibility with libSBML and to avoid problems if the internal of jsbml change, so it is preferable to use it instead of directly using {@link org.sbml.jsbml.xml.stax.SBMLWriter}. The {@link SBMLWriter} class is the converse of {@link SBMLReader}, and provides the main interface for serializing SBML models into XML and writing the result to files and text strings. The methods for writing SBML all take an {@link SBMLDocument} object and a destination. @author Andreas Dräger @author Nicolas Rodriguez @since 0.8 @version $Rev: 1524 $

org.sbml.jsbml.xml.stax.SBMLWriter

A SBMLWriter provides the methods to write a SBML file. @author Marine Dumousseau @author Nicolas Rodriguez @author Andreas Dräger @since 0.8 @version $Rev: 1533 $

   * @return the {@link Annotation} of this SBML object as a {@link String} or
   *         an empty {@link String} if there are no {@link Annotation}.
   * 
   */
  public String getAnnotationString() {
    return isSetAnnotation() ? (new SBMLWriter()).writeAnnotation(this) : "";
  }

  
    SBMLDocument doc = new SBMLReader().readSBMLFile(fileName);
    
    String resultFileName = "biomd-025.xml";
    
    new SBMLWriter().write(doc, resultFileName);
  }

    s1.setValue(23.7);
    model.removeSpecies(s1);


    try {
      System.out.println();
      new SBMLWriter().write(doc, System.out);
    } catch (Exception exc) {
      exc.printStackTrace();
    }
  }

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Examples of SBMLWriter

Examples of org.sbml.jsbml.xml.stax.SBMLWriter

Examples of org.sbml.jsbml.xml.stax.SBMLWriter

Examples of org.sbml.jsbml.xml.stax.SBMLWriter