Examples of SBMLDocument

Examples of org.sbml.jsbml.SBMLDocument

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      // TODO: add all other namespaces !!

      if (isSBMLNamespaceNeeded) {
        // writing the SBML namespace
        SBMLDocument doc = null;
        SBase sbase = m.getMath().getParentSBMLObject();
        String sbmlNamespace = SBMLDocument.URI_NAMESPACE_L3V1Core;
       
        if (sbase != null) {
          doc = sbase.getSBMLDocument();
          sbmlNamespace = doc.getSBMLDocumentNamespaces().get("xmlns");
         
          if (sbmlNamespace == null) {
            logger.warn("writeMathML: the SBML namespace of this SBMLDocument" +
                " could not be found, using the default namespace (" +
                SBMLDocument.URI_NAMESPACE_L3V1Core + ") instead.");
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Examples of org.sbml.libsbml.SBMLDocument

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   @Test
   @Ignore
      public void testEvaluateLightFunction() throws IOException {
          SBMLDocument light = libsbml.readSBML(Light.getAbsolutePath());
          Model m = light.getModel();
          ListOfFunctionDefinitions lofd = m.getListOfFunctionDefinitions();
          for (long i = 0; i < lofd.size(); i++) {
              FunctionDefinition fd = lofd.get(i);
            
              ASTNode root = convertSBMLMathToJavaMath(fd.getMath());
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