reads.add(newRecord(16085602, "60S65M", 125));
reads.add(newRecord(16085517, "60M65S", 125));
List<SAMRecord> outputList = cc.processRead(reads);
assertEquals(outputList.size(), 1);
SAMRecord combined = outputList.get(0);
assertEquals(combined.getAlignmentStart(), 16085517);
assertEquals(combined.getCigarString(), "60M25D65M");
assertEquals(combined.getReadLength(), 125);
}